genome.fa.s2190.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002190.1 Hibiscus syriacus cultivar Beakdansim tig00004459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87044

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218--242	13	1.9	13	100	0	50	32	0	12	56	1.36
4592--4643	22	2.4	21	75	12	52	61	1	1	34	1.18
16908--16977	30	2.3	30	80	9	81	31	12	12	42	1.81
16925--16989	30	2.2	28	83	5	76	33	10	10	44	1.74
17223--17264	19	2.2	19	95	0	75	52	4	0	42	1.22
17361--17518	21	7.8	20	72	7	86	38	25	17	18	1.92
17485--17769	20	14.2	20	82	5	283	36	24	17	20	1.94
17505--17769	60	4.4	60	85	4	322	36	25	17	20	1.95
18452--18498	24	2.0	24	87	8	69	25	14	21	38	1.92
20985--21276	19	16.7	19	77	17	321	45	17	21	15	1.85
20971--21276	52	5.9	52	89	6	453	45	17	21	15	1.85
20985--21217	71	3.3	69	80	11	235	46	17	21	15	1.83
20971--21220	33	7.2	33	76	19	235	46	17	21	14	1.83
21013--21270	33	7.3	36	80	15	244	46	16	21	15	1.83
21285--21382	19	5.4	19	84	13	143	14	22	17	45	1.84
21266--21382	53	2.2	53	96	1	218	13	24	17	43	1.86
21489--21525	14	2.6	14	91	0	65	45	21	0	32	1.52
23438--23503	19	3.4	20	87	6	91	45	27	16	10	1.80
23494--23549	14	3.7	14	80	17	67	44	23	21	10	1.83
23475--23565	32	2.8	32	93	1	155	46	21	20	10	1.82
23566--23693	19	7.3	18	74	17	110	8	17	28	45	1.78
23566--23656	33	2.8	33	91	5	141	7	18	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23741--24663	92	10.1	93	96	2	1735	45	19	13	22	1.84
26360--26416	14	3.7	14	70	20	51	43	22	22	10	1.84
26352--26435	33	2.5	33	96	0	159	46	20	22	10	1.81
26374--26457	19	4.7	19	78	14	106	45	21	21	11	1.84
26469--26525	14	3.7	14	75	20	60	8	24	22	43	1.81
26453--26533	33	2.5	33	95	0	144	8	22	22	46	1.78
26510--26585	21	3.7	21	83	3	109	11	25	17	46	1.82
26509--26586	41	1.9	41	97	0	147	12	25	16	44	1.83
26663--26733	33	2.2	33	92	0	115	47	18	22	11	1.80
26916--26969	21	2.5	22	78	3	65	20	16	38	24	1.92
27116--27249	20	6.7	20	83	6	164	18	17	27	35	1.94
27115--27249	40	3.3	40	82	5	182	18	17	27	36	1.94
27217--27271	21	2.7	20	88	2	74	10	18	25	45	1.82
27118--27268	81	1.9	81	87	2	223	18	17	26	37	1.93
27236--27374	21	6.7	21	72	5	86	20	17	25	37	1.93
27236--27335	42	2.4	44	77	9	102	21	18	23	38	1.94
37033--37099	36	1.9	37	88	11	106	62	4	25	7	1.40
37071--37104	12	2.6	14	81	18	54	79	0	20	0	0.73
37074--37103	12	2.5	12	100	0	60	80	0	20	0	0.72
42682--42774	45	2.0	45	85	4	123	34	4	31	30	1.77
44203--44316	3	37.7	3	91	1	183	34	2	0	63	1.09
44788--44831	22	2.0	22	81	0	52	68	6	25	0	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45697--45743	20	2.3	21	75	10	53	25	4	8	61	1.43
45787--45832	25	2.0	24	83	12	60	43	0	0	56	0.99
57112--57166	7	8.0	7	79	18	62	85	0	14	0	0.60
57112--57185	12	6.0	12	83	14	89	82	0	16	1	0.74
57112--57185	36	2.0	38	87	10	109	82	0	16	1	0.74
57116--57173	6	9.8	6	78	17	68	84	0	13	1	0.70
57112--57185	18	4.1	17	86	11	94	82	0	16	1	0.74
58221--58688	165	2.8	165	94	0	803	27	13	22	36	1.92
58221--58688	83	5.7	82	95	0	792	27	13	22	36	1.92
58221--58688	248	1.9	248	94	0	819	27	13	22	36	1.92
59329--60004	113	6.0	113	91	2	1088	37	13	18	30	1.89
59329--60004	227	3.0	225	92	1	1127	37	13	18	30	1.89
60321--60438	3	39.7	3	90	1	184	35	2	0	61	1.09
60894--60953	22	2.8	22	79	2	68	73	5	21	0	1.02
61825--61871	20	2.3	21	75	10	53	25	4	8	61	1.43
61915--61960	25	2.0	24	83	12	60	43	0	0	56	0.99
62771--62893	37	3.4	37	88	3	178	22	6	24	46	1.75
63983--64022	21	1.9	21	94	0	71	20	42	25	12	1.86
69789--69868	20	3.8	21	75	12	74	25	33	25	16	1.95
71504--71529	12	2.2	12	100	0	52	26	34	38	0	1.57
73680--73848	38	4.4	40	70	17	126	56	17	2	23	1.52
73681--73886	111	1.8	113	87	2	308	54	17	3	24	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79420--79452	11	2.8	12	86	13	50	18	12	0	69	1.18

Tables:   1

The End!