genome.fa.s2191.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002191.1 Hibiscus syriacus cultivar Beakdansim tig00004465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86638

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5968--6123	64	2.4	65	80	5	165	32	16	19	31	1.94
17376--17444	18	3.6	18	73	13	57	31	17	23	27	1.97
17496--17548	20	2.6	21	76	11	56	39	18	13	28	1.88
17331--17548	103	2.1	102	79	5	244	35	15	18	31	1.92
22450--22489	19	2.2	18	86	8	55	70	10	0	20	1.16
22913--22957	23	2.0	23	90	0	72	37	13	22	26	1.91
28660--28718	27	2.2	27	81	6	75	71	1	0	27	0.96
30805--31178	189	2.0	192	85	4	506	29	14	17	38	1.89
51016--51326	36	8.6	36	78	2	320	35	15	16	32	1.90
51018--51330	108	2.9	108	82	2	387	35	15	16	31	1.91
50920--51326	144	2.8	144	78	7	360	35	16	15	32	1.90
59413--59481	30	2.3	30	82	7	86	36	23	5	34	1.79
59413--59478	31	2.2	31	83	8	82	34	24	6	34	1.80
64437--66042	4	405.0	4	97	1	3024	49	24	0	25	1.51
66957--67048	38	2.4	38	85	0	112	32	26	7	33	1.84
66957--67049	19	4.9	19	72	7	64	33	25	7	33	1.84
66995--67055	19	3.2	19	76	0	68	29	27	11	31	1.92
68901--68947	23	2.0	24	87	8	69	42	2	0	55	1.12
68909--68956	15	3.2	15	79	5	53	41	0	0	58	0.98
76202--76657	133	3.4	135	83	6	524	31	18	20	30	1.96
77311--77511	51	3.9	51	88	2	251	35	17	19	26	1.95
77311--77508	102	1.9	102	87	0	288	34	18	19	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77508--77849	45	7.6	45	82	2	300	40	17	16	24	1.90
77513--77849	135	2.5	135	82	6	364	40	17	16	25	1.90
78085--78135	16	3.2	16	81	13	70	1	13	1	82	0.85
78085--78148	31	2.1	31	82	2	76	9	10	1	78	1.04
78148--78995	258	3.3	257	84	2	1083	35	17	15	32	1.91
78871--79158	153	1.9	154	86	0	416	34	16	13	35	1.88
79021--79679	258	2.6	257	87	2	914	34	16	16	32	1.91
79387--79445	20	2.9	21	71	5	57	25	23	22	28	1.99
78350--79925	668	2.4	667	88	1	2337	34	16	15	32	1.91
79534--79818	155	1.8	154	87	2	419	35	14	14	36	1.86
81736--81766	2	16.0	2	93	6	55	51	0	0	48	1.00

Tables:   1

The End!