Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002192.1 Hibiscus syriacus cultivar Beakdansim tig00004468_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69220

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
363--415
22
2.4
22
74
0
52
33
9
18
37
1.83
19795--19925
67
2.0
67
95
0
235
25
11
15
48
1.78
21245--21322
13
5.4
13
75
18
66
16
44
21
16
1.86
21240--21315
18
4.3
18
76
20
81
17
46
22
14
1.84
21240--21307
31
2.2
31
94
0
118
17
47
22
13
1.82
21281--21341
8
7.5
8
82
17
65
16
39
22
21
1.92
22612--22652
18
2.3
18
86
0
55
53
2
17
26
1.56
23579--23677
47
2.1
47
98
0
189
25
16
14
44
1.85
23784--23915
48
2.8
48
76
13
137
21
16
18
42
1.89
23801--23915
24
4.8
24
88
6
162
22
17
19
40
1.91
26103--26180
13
5.4
13
75
18
66
16
44
21
16
1.86
26098--26173
18
4.3
18
76
20
81
17
46
22
14
1.84
26098--26165
31
2.2
31
94
0
118
17
47
22
13
1.82
26139--26199
8
7.5
8
82
17
65
16
39
22
21
1.92
27470--27510
18
2.3
18
86
0
55
53
2
17
26
1.56
28437--28535
47
2.1
47
98
0
189
25
16
14
44
1.85
28642--28773
48
2.8
48
76
13
137
21
16
18
42
1.89
28659--28773
24
4.8
24
88
6
162
22
17
19
40
1.91
39276--39469
93
2.1
93
79
8
214
42
9
8
39
1.68
50870--50938
36
1.9
36
94
2
122
27
11
8
52
1.67
56491--56858
187
2.0
186
96
0
673
30
12
6
50
1.65
57011--57054
18
2.4
18
92
0
70
20
2
9
68
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57613--57672
22
2.9
21
78
11
61
50
0
0
50
1.00
57633--57681
22
2.2
23
82
10
57
48
0
2
48
1.12
57777--57810
17
1.9
18
94
5
61
50
0
2
47
1.16
58422--58484
31
2.0
31
84
9
83
60
3
0
36
1.13
59025--59101
32
2.4
32
93
2
127
46
24
12
15
1.81
59049--59102
16
3.3
16
72
12
56
46
24
12
16
1.82
59601--59639
20
2.0
20
84
0
51
58
7
2
30
1.39
59675--59717
22
1.9
23
85
4
61
62
0
2
34
1.08
62148--62202
20
2.6
21
75
13
51
34
0
3
61
1.13
62350--62422
2
36.5
2
100
0
146
50
0
0
49
1.00
62422--62450
2
14.5
2
100
0
58
51
0
48
0
1.00
62523--62574
16
3.0
17
76
20
54
42
3
25
28
1.72
63923--63962
2
20.0
2
89
0
62
47
2
0
50
1.14
67147--67174
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!