genome.fa.s2193.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002193.1 Hibiscus syriacus cultivar Beakdansim tig00004470_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83957

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--100	29	2.9	29	91	3	136	21	29	34	15	1.94
1173--1217	17	2.6	17	78	21	58	64	2	0	33	1.06
11429--11476	23	2.1	23	92	3	80	50	6	0	43	1.27
12151--12175	2	12.5	2	100	0	50	52	0	0	48	1.00
14850--14920	35	2.0	36	86	5	101	47	1	1	49	1.18
15307--15354	25	1.9	25	95	0	87	41	22	8	27	1.82
32446--32497	27	1.9	27	84	7	70	48	3	0	48	1.20
32842--32985	59	2.4	59	82	11	188	31	16	18	33	1.94
34074--34126	21	2.5	21	81	6	72	20	26	18	33	1.96
34116--34162	20	2.3	20	85	3	58	40	17	21	21	1.91
34156--34250	20	4.7	20	82	7	102	34	27	16	21	1.95
34153--34230	41	1.9	41	91	0	129	38	26	15	19	1.91
34156--34270	20	5.7	19	77	11	86	35	26	16	21	1.94
34440--34486	22	2.1	22	88	0	67	23	36	14	25	1.93
34744--34802	20	3.0	20	87	0	73	15	18	22	44	1.87
36121--36186	18	3.7	18	95	0	114	27	45	12	15	1.81
36727--36772	20	2.3	20	84	0	56	36	23	21	17	1.94
36738--36782	20	2.3	20	88	3	74	37	17	24	20	1.93
36746--36848	19	5.6	19	77	12	108	42	19	22	15	1.88
36886--36943	20	2.9	19	90	7	89	17	25	24	32	1.96
36887--36960	20	3.7	19	80	8	76	17	21	25	35	1.95
36928--36966	20	2.0	20	89	0	60	23	12	28	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37308--37386	42	1.9	41	89	2	122	25	40	15	18	1.90
37304--37395	41	2.2	41	83	7	123	23	40	15	20	1.91
38791--38829	14	2.8	14	84	0	51	35	0	17	46	1.49
38969--39033	19	3.7	19	80	15	86	47	18	20	13	1.82
39033--39108	20	3.8	20	94	0	125	15	22	22	39	1.92
39331--39383	20	2.7	20	93	0	88	26	20	26	26	1.99
39421--39469	20	2.4	20	86	3	62	22	22	16	38	1.92
39459--39511	21	2.5	22	78	6	65	33	18	24	22	1.97
42191--42244	27	2.0	27	96	0	99	35	12	7	44	1.71
44066--44095	2	15.0	2	100	0	60	50	0	0	50	1.00
47361--47399	16	2.4	16	95	0	69	51	17	5	25	1.66
51946--52001	24	2.3	24	90	0	94	14	10	12	62	1.55
53334--53365	2	16.0	2	100	0	64	50	0	0	50	1.00
58001--58037	19	1.9	19	94	0	65	21	24	13	40	1.89
61196--61366	60	2.8	59	79	3	173	42	5	18	33	1.75
61897--61932	2	18.0	2	100	0	72	50	0	0	50	1.00
61999--62337	30	11.5	29	73	13	196	37	7	2	52	1.42
61999--62144	59	2.5	58	81	6	172	34	8	3	53	1.49
65187--65214	2	14.0	2	100	0	56	50	0	50	0	1.00
73596--73635	20	2.0	20	85	4	55	20	20	2	57	1.52
75783--75849	21	3.2	21	65	4	64	20	16	17	44	1.86
83250--83282	15	2.1	16	88	5	50	42	6	24	27	1.78

Tables:   1

The End!