Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002194.1 Hibiscus syriacus cultivar Beakdansim tig00004471_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85261

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
135--161
3
9.0
3
100
0
54
66
0
0
33
0.92
4916--4943
14
2.0
14
100
0
56
21
7
0
71
1.09
5876--5920
22
2.0
22
82
0
54
55
2
6
35
1.38
5915--6106
71
2.7
71
86
5
271
45
4
12
36
1.63
6103--6141
18
2.2
17
86
13
53
69
0
0
30
0.89
7421--8000
123
4.7
123
91
2
941
24
18
16
40
1.90
8472--8517
22
2.1
23
88
8
69
54
0
10
34
1.36
16237--16268
15
2.1
15
100
0
64
50
6
18
25
1.70
19921--20114
71
2.7
72
90
1
291
45
5
11
36
1.65
23480--23537
29
2.0
29
83
3
73
44
10
6
37
1.65
23638--23697
2
30.0
2
100
0
120
50
0
0
50
1.00
25140--25197
21
2.6
23
81
10
68
65
13
12
8
1.47
35668--35697
7
4.1
7
95
4
51
40
0
13
46
1.43
36914--36942
13
2.1
14
93
6
51
20
0
0
79
0.74
37038--37162
5
25.6
5
70
11
80
19
2
4
73
1.12
37047--37101
19
2.9
18
83
5
65
23
3
1
70
1.12
37084--37170
35
2.5
34
81
3
93
20
1
5
72
1.12
37044--37164
9
13.6
9
71
15
65
20
2
4
72
1.13
43922--43975
6
8.0
6
79
20
54
79
0
20
0
0.73
43922--43975
21
2.6
20
91
5
81
79
0
20
0
0.73
43923--43976
14
3.9
14
88
7
83
81
0
18
0
0.69
44014--44071
6
9.3
6
80
16
57
82
0
15
1
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44020--44071
11
4.8
11
81
13
72
82
0
15
1
0.75
44016--44066
26
1.9
27
92
4
86
82
0
15
1
0.76
44014--44066
13
4.0
14
76
11
58
83
0
15
1
0.74
44822--44846
11
2.3
11
100
0
50
20
12
16
52
1.75
72206--72265
18
3.2
18
80
4
66
46
0
3
50
1.18
72458--72671
55
3.9
55
81
4
252
28
22
15
33
1.95
72470--72670
110
1.8
110
84
2
278
29
21
15
33
1.94
72686--73039
54
6.6
54
85
1
469
20
26
20
32
1.97
72648--72998
162
2.2
162
87
2
517
21
25
19
33
1.97
74550--74819
125
2.2
124
85
3
355
25
27
17
29
1.97
76066--76109
14
3.2
13
81
18
54
2
13
2
81
0.88
78700--78830
41
3.1
42
88
6
160
16
17
19
46
1.84
78700--78830
62
2.1
64
84
8
171
16
17
19
46
1.84
78714--78841
43
3.0
43
86
6
156
15
17
21
45
1.85
78700--78830
21
6.2
21
87
5
169
16
17
19
46
1.84
83089--83141
14
3.5
14
78
16
61
24
1
3
69
1.15
83135--83192
10
6.3
9
75
20
50
20
3
1
74
1.06
83146--83192
17
2.7
18
87
6
62
21
0
2
76
0.89
83151--83227
30
2.6
29
80
10
84
22
3
2
71
1.15
83099--83205
42
2.7
39
79
11
108
22
2
3
71
1.16
83147--83205
22
2.7
22
84
10
59
23
0
3
72
0.99
85010--85091
22
3.7
22
77
11
78
18
21
23
36
1.95

Tables:   1

The End!