genome.fa.s2197.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002197.1 Hibiscus syriacus cultivar Beakdansim tig00004477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153799

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1402--1468	19	3.5	19	79	4	80	38	23	22	14	1.92
1383--1467	20	4.4	19	77	4	71	41	24	18	15	1.89
1457--1496	14	2.9	14	100	0	80	50	27	15	7	1.70
1508--1572	18	3.8	18	76	17	75	10	20	23	46	1.81
1530--1585	14	3.9	14	75	20	53	8	16	25	50	1.74
1513--1600	32	2.8	31	91	6	142	11	18	22	47	1.80
1586--1642	19	2.9	19	82	5	69	21	22	24	31	1.98
2100--2144	18	2.5	18	85	0	63	11	15	46	26	1.79
3669--3711	21	2.0	21	95	0	77	18	16	44	20	1.87
3915--3992	41	1.9	41	89	0	120	23	15	23	38	1.92
3876--3989	20	5.7	20	77	10	90	25	16	24	33	1.96
3915--4010	41	2.3	41	82	3	113	21	18	22	36	1.95
5129--5171	19	2.4	18	82	14	54	53	4	13	27	1.60
7095--7230	57	2.4	57	87	8	188	16	9	25	48	1.76
10074--10115	18	2.3	18	95	0	75	23	11	33	30	1.91
10441--10509	29	2.4	29	87	0	102	14	31	28	24	1.95
10455--10516	29	2.1	29	87	0	88	17	33	25	22	1.96
14594--14624	14	2.1	15	94	5	55	67	0	6	25	1.14
14842--14916	33	2.3	32	93	2	123	56	8	5	30	1.51
15957--15999	20	2.2	20	83	8	52	20	2	11	65	1.36
16240--16280	3	13.7	3	100	0	82	68	0	0	31	0.90
17937--18004	25	2.8	24	82	6	82	41	0	20	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19301--19371	20	3.5	20	100	0	142	21	19	15	43	1.87
19299--19403	40	2.6	38	86	10	131	20	18	19	42	1.89
25553--25936	192	2.0	192	98	0	750	35	10	19	34	1.86
27257--27313	24	2.3	24	81	3	69	10	28	5	56	1.55
31593--31633	21	2.0	21	85	0	55	29	29	24	17	1.97
32215--32249	18	1.9	18	88	11	54	54	5	17	22	1.64
32306--32349	22	2.0	22	86	4	63	45	0	22	31	1.53
33123--33724	149	4.0	149	98	0	1177	27	17	20	34	1.95
33703--33747	23	2.0	23	86	0	63	20	24	28	26	1.99
37399--37597	3	65.7	3	85	4	265	36	1	1	61	1.12
50213--50307	6	15.5	6	72	23	74	78	0	21	0	0.74
50213--50307	9	10.3	9	73	15	70	78	0	21	0	0.74
50222--50306	38	2.2	36	74	15	50	78	0	21	0	0.74
51243--51539	52	5.7	52	94	1	474	23	14	21	40	1.90
51243--51539	155	1.9	155	91	2	490	23	14	21	40	1.90
52097--52858	113	6.6	113	94	2	1164	36	14	20	28	1.92
52647--53062	206	2.0	204	92	1	681	36	14	19	29	1.92
52760--52951	93	2.1	93	98	0	375	34	16	18	30	1.93
52883--53101	111	2.0	112	88	2	334	37	12	21	28	1.90
53375--53559	3	61.7	3	84	4	248	36	1	1	61	1.13
79318--79375	21	2.8	22	87	7	77	36	0	3	60	1.14
81967--82029	32	2.0	31	88	11	94	42	7	6	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86330--86366	17	2.2	17	90	0	56	72	0	0	27	0.84
86657--86703	22	2.2	21	85	11	60	34	12	0	53	1.39
93866--93931	34	1.9	35	90	3	107	15	7	42	34	1.75
94490--94533	20	2.3	18	78	14	52	20	20	9	50	1.75
94497--94534	20	1.9	20	94	0	67	21	23	10	44	1.83
100411--100484	23	3.2	23	73	7	69	59	4	9	27	1.47
102205--102274	34	2.1	34	100	0	140	37	17	7	38	1.77
103310--103354	2	22.5	2	100	0	90	48	0	0	51	1.00
103702--103742	18	2.3	18	100	0	82	17	12	21	48	1.79
113081--113115	16	2.1	17	89	5	54	48	5	8	37	1.58
113142--113180	2	19.5	2	100	0	78	51	0	0	48	1.00
113634--113664	16	1.9	16	93	0	53	6	22	0	70	1.09
114822--114854	3	11.3	3	93	6	59	69	0	0	30	0.88
115011--115254	111	2.2	113	90	2	377	29	16	25	28	1.97
115787--115833	13	3.5	13	77	13	51	55	2	2	40	1.24
117255--117306	3	17.3	3	91	0	86	61	0	1	36	1.07
117631--118531	113	7.9	112	90	3	1166	28	19	13	38	1.90
117631--118517	339	2.6	339	88	2	1289	28	19	13	38	1.90
119260--119728	83	5.7	83	97	0	843	36	20	14	28	1.92
131527--131579	19	2.9	18	75	11	54	73	1	0	24	0.93
132213--132259	13	3.5	13	77	13	51	55	2	2	40	1.24
133680--133743	3	21.3	3	96	0	119	64	0	1	34	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133825--133935	37	3.0	37	95	0	195	20	18	20	40	1.91
134321--134442	43	2.9	41	85	7	154	20	18	30	30	1.97
134718--134780	32	1.9	32	87	3	90	38	25	6	30	1.81
135825--135899	19	3.9	18	79	10	60	5	13	1	80	0.95
135825--135901	9	8.0	9	79	12	73	5	12	1	80	0.94
142814--142848	16	2.1	17	89	5	54	48	5	8	37	1.58
142875--142904	2	15.0	2	100	0	60	50	0	0	50	1.00
143361--143391	16	1.9	16	93	0	53	6	22	0	70	1.09
150821--150915	48	2.0	47	95	2	172	27	11	28	32	1.91

Tables:   1

The End!