genome.fa.s2198.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002198.1 Hibiscus syriacus cultivar Beakdansim tig00004479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121885

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5446--5538	12	7.8	12	69	9	64	48	17	13	20	1.81
5446--5538	24	3.9	24	77	2	80	48	17	13	20	1.81
5497--5552	24	2.3	24	78	6	69	46	16	17	19	1.84
6693--6728	18	2.0	18	88	0	54	30	16	0	52	1.44
8050--8078	13	2.2	13	100	0	58	13	20	48	17	1.81
14016--14040	13	1.9	13	100	0	50	68	0	0	32	0.90
18511--18543	15	2.2	15	94	0	57	27	12	18	42	1.85
25930--25972	2	21.5	2	100	0	86	51	0	48	0	1.00
26430--26518	34	2.7	31	79	6	88	39	0	2	58	1.11
26658--26711	17	3.2	17	72	0	54	31	0	3	64	1.11
27243--27349	34	3.1	34	87	0	151	56	4	2	36	1.35
27577--27647	32	2.2	32	82	7	81	33	14	2	49	1.58
27702--28031	128	2.6	128	98	0	633	33	18	23	23	1.97
35522--35559	17	2.2	17	90	0	58	36	10	10	42	1.74
39261--39335	31	2.4	30	77	4	78	29	32	24	14	1.95
43080--43117	2	19.0	2	100	0	76	50	0	0	50	1.00
47607--47653	24	1.9	25	86	4	69	51	0	2	46	1.13
47607--47666	24	2.5	23	83	5	66	53	0	1	45	1.10
47615--47666	23	2.2	23	86	3	68	55	0	1	42	1.10
48391--48438	25	1.9	25	100	0	96	37	0	12	50	1.41
49656--49715	28	2.1	28	87	0	84	31	16	20	31	1.95
55634--55683	23	2.1	22	89	10	73	38	6	2	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63067--63116	24	2.1	24	85	7	66	60	14	2	24	1.45
66450--66504	20	2.7	21	82	2	67	70	0	16	12	1.16
66448--66526	26	3.0	25	73	12	70	67	0	17	15	1.24
73241--73290	24	2.1	24	85	7	66	60	14	2	24	1.45
74389--74465	24	3.4	24	68	14	81	25	24	27	22	2.00
74413--74490	20	3.7	20	69	12	66	28	20	25	25	1.99
74369--74488	44	2.8	44	94	1	206	28	22	26	22	1.99
75095--75147	23	2.3	23	86	0	79	16	24	26	32	1.97
78078--78246	31	5.5	31	72	20	115	26	14	6	52	1.66
84476--84520	23	2.0	23	100	0	90	11	26	4	57	1.52
87695--87737	21	2.0	21	86	0	59	30	30	23	16	1.96
88283--88598	103	3.1	102	94	1	553	25	13	25	36	1.92
88620--88680	23	2.7	23	87	5	88	21	27	24	26	1.99
94732--94774	21	2.0	21	81	0	50	27	30	25	16	1.97
94802--94839	20	1.9	20	88	0	58	23	34	31	10	1.89
95318--95638	103	3.1	103	96	0	606	25	13	24	36	1.92
95655--95717	23	2.7	23	85	4	83	20	26	25	26	1.99
108845--108930	28	3.0	28	78	13	86	20	0	33	45	1.52
108850--108930	7	11.7	7	76	15	53	19	0	33	46	1.50
109097--109132	2	18.0	2	100	0	72	50	0	0	50	1.00
111257--111282	13	2.0	13	100	0	52	46	0	0	53	1.00
114463--114488	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!