genome.fa.s2199.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002199.1 Hibiscus syriacus cultivar Beakdansim tig00004480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76228

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1371--1451	40	2.0	40	92	0	135	13	22	20	43	1.87
1831--1893	29	2.2	29	100	0	126	47	9	0	42	1.36
4453--4564	59	1.9	59	89	7	174	34	11	23	30	1.90
4630--4696	25	2.7	25	100	0	134	46	11	19	22	1.82
5782--6409	129	4.7	131	72	11	411	34	13	28	23	1.93
9397--9459	32	2.0	32	100	0	126	12	19	17	50	1.77
11007--11032	6	4.3	6	100	0	52	15	19	30	34	1.93
16509--16542	2	17.0	2	100	0	68	50	0	0	50	1.00
23388--23449	33	2.0	32	87	9	92	51	8	9	30	1.63
25521--25559	12	3.2	12	81	3	51	58	0	0	41	0.98
30975--31026	21	2.5	21	81	3	61	38	19	25	17	1.93
31015--31149	20	6.7	20	78	7	112	34	24	17	24	1.96
31012--31143	61	2.2	61	85	0	174	36	24	15	23	1.94
31623--31682	20	3.0	20	85	0	66	20	18	20	41	1.90
31818--31872	25	2.2	24	78	15	58	20	9	18	52	1.71
32972--33015	18	2.5	18	88	3	72	29	43	13	13	1.83
33497--33542	20	2.3	20	88	0	65	36	26	21	15	1.93
33536--33618	19	4.6	19	78	14	104	44	20	21	13	1.85
33630--33719	14	5.8	14	71	21	72	12	17	22	47	1.80
33625--33736	33	3.4	33	93	1	190	12	18	22	46	1.82
33646--33736	14	5.4	18	69	23	81	14	18	20	46	1.84
33730--33776	20	2.3	20	88	0	67	17	23	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34142--34259	42	2.8	41	83	2	128	22	39	16	21	1.92
35729--35775	19	2.5	19	89	0	76	48	19	17	14	1.81
35696--35813	52	2.3	53	85	4	159	44	19	22	13	1.86
35968--36004	14	2.6	14	91	0	65	45	24	0	29	1.53
37695--37881	93	2.0	91	89	8	288	47	18	12	21	1.82
39569--39628	20	3.0	20	80	0	66	46	16	21	15	1.83
39617--39705	14	5.6	14	70	23	61	41	21	24	12	1.87
39593--39722	33	3.9	33	93	1	197	43	20	23	12	1.86
39726--39789	19	3.3	19	78	8	58	12	12	25	50	1.75
40309--40415	20	5.3	20	83	6	110	23	20	17	38	1.93
40327--40604	41	6.8	41	75	11	153	27	20	18	33	1.96
40418--40476	20	2.9	21	82	5	75	42	18	20	18	1.90
40410--40482	21	3.5	21	79	7	78	38	19	20	21	1.94
40430--40557	61	2.1	61	81	5	143	30	21	21	26	1.98
40471--40564	20	4.7	20	84	7	136	24	21	22	31	1.98
40512--40587	21	3.7	21	79	10	102	22	22	18	36	1.95
40472--40604	61	2.2	61	85	5	171	23	21	20	35	1.96
40596--40646	21	2.4	22	80	6	70	35	17	27	19	1.94
42642--42737	3	32.0	3	87	0	102	43	0	0	56	0.99
42631--42731	18	5.3	18	76	15	80	43	0	0	56	0.99
42859--42900	16	2.7	16	88	3	59	11	50	19	19	1.78
42871--42910	16	2.6	16	96	4	73	7	57	17	17	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44848--44884	15	2.7	15	88	12	53	24	5	8	62	1.44
55422--55481	1	60.0	1	83	0	75	91	0	8	0	0.41
55422--55481	18	3.2	19	88	7	95	91	0	8	0	0.41
55422--55481	27	2.3	26	88	5	93	91	0	8	0	0.41
56559--56722	81	2.0	83	96	2	305	27	14	21	36	1.92
56780--57044	83	3.2	83	96	0	476	27	13	22	37	1.91
57833--58151	113	2.8	113	94	4	551	38	12	19	29	1.89
58088--58409	43	7.6	43	96	2	580	47	11	22	18	1.80
58770--58849	3	27.3	3	81	9	94	40	0	0	60	0.97
58770--58849	42	1.9	42	92	5	135	40	0	0	60	0.97
58969--59010	16	2.7	16	88	3	59	11	50	19	19	1.78
58981--59020	16	2.6	16	96	4	73	7	57	17	17	1.62
64114--64194	41	2.0	41	95	2	146	33	29	14	22	1.94
68382--68442	6	10.2	6	100	0	122	32	34	0	32	1.58
69311--69338	9	3.1	9	100	0	56	25	10	0	64	1.26
75750--75869	59	2.0	59	88	3	179	31	23	14	30	1.94

Tables:   1

The End!