Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000022.1 Hibiscus syriacus cultivar Beakdansim tig00000039_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52469

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
813--854
19
2.2
19
86
0
57
26
0
30
42
1.55
948--990
13
3.3
13
84
12
61
41
9
0
48
1.35
988--1039
17
2.9
18
72
18
54
48
0
1
50
1.12
1017--1069
21
2.5
22
77
20
67
41
0
1
56
1.10
1185--1220
2
18.0
2
100
0
72
50
0
0
50
1.00
1411--1500
2
49.5
2
73
18
63
43
1
1
54
1.14
1416--1499
33
2.5
32
86
7
114
44
1
1
53
1.16
1415--1496
43
1.9
43
80
14
98
42
1
1
54
1.15
3173--3292
28
4.4
28
88
6
183
30
30
22
16
1.96
3173--3292
54
2.2
54
90
3
195
30
30
22
16
1.96
3701--3920
4
55.5
4
98
1
426
25
49
25
0
1.50
3919--4273
4
89.0
4
94
1
624
49
25
1
24
1.58
4344--4392
24
2.0
25
92
4
82
24
18
12
44
1.84
8472--8502
12
2.6
12
100
0
62
58
0
6
35
1.24
12869--12946
22
3.5
22
98
0
147
24
28
25
21
1.99
16657--16684
3
9.3
3
100
0
56
67
0
0
32
0.91
16844--17256
42
9.7
42
79
5
409
35
17
22
24
1.96
22650--22681
15
2.1
15
94
0
55
9
68
15
6
1.36
23895--23941
18
2.6
18
86
3
58
44
4
0
51
1.21
23928--23957
16
1.9
15
93
6
51
30
3
0
66
1.07
28548--28668
64
1.9
64
82
1
152
41
21
17
19
1.90
29708--29840
31
4.3
30
87
6
162
26
18
18
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29707--29861
62
2.5
61
84
8
190
26
17
19
36
1.94
30153--30191
20
2.0
20
90
10
62
46
0
17
35
1.49
34334--34381
20
2.4
20
96
0
87
39
0
18
41
1.51
38344--38420
23
3.5
21
79
10
73
19
28
28
23
1.98
38358--38420
23
2.7
23
92
0
99
19
25
33
22
1.97

Tables:   1

The End!