genome.fa.s2200.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002200.1 Hibiscus syriacus cultivar Beakdansim tig00004483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63115

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4002--4054	26	2.0	26	82	10	63	33	5	3	56	1.41
6465--6508	23	1.9	23	90	0	70	36	2	6	54	1.40
9879--9930	22	2.3	23	84	12	65	26	3	7	61	1.41
10521--10581	30	2.0	30	81	6	70	45	3	4	45	1.41
10535--10607	30	2.5	30	82	6	87	39	5	8	46	1.57
10953--11019	27	2.5	27	92	0	116	35	17	19	26	1.94
13052--13081	15	2.0	15	100	0	60	40	13	0	46	1.43
15522--15571	14	3.9	14	77	20	63	52	26	12	10	1.70
15515--15570	24	2.3	24	96	0	103	53	23	12	10	1.69
17418--17469	2	26.0	2	100	0	104	0	50	0	50	1.00
18301--18349	21	2.3	21	96	0	89	26	18	12	42	1.85
22955--23002	21	2.3	21	96	0	87	27	18	12	41	1.86
28523--28566	18	2.3	20	84	11	65	47	0	2	50	1.13
30559--30602	21	2.2	20	84	12	54	59	11	9	20	1.59
30359--31199	182	4.6	182	82	7	1040	44	13	15	27	1.83
30819--30843	11	2.3	11	100	0	50	44	12	0	44	1.41
30352--31199	373	2.3	370	86	5	1188	44	13	15	27	1.83
31584--31628	19	2.4	19	92	3	74	42	0	20	37	1.52
32817--32872	24	2.5	22	77	13	60	41	1	7	50	1.40
33109--33160	9	5.8	9	74	0	50	38	5	50	5	1.51
33108--33155	18	2.7	18	96	0	87	39	6	47	6	1.54
33569--33607	18	2.2	18	95	0	69	53	0	41	5	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34328--34369	21	2.0	21	95	0	75	26	28	21	23	1.99
34498--34558	21	3.0	20	88	7	88	16	29	34	19	1.94
36166--36215	19	2.6	19	93	0	82	30	2	10	58	1.42
36561--37366	200	4.0	199	95	0	1369	41	15	15	27	1.87
36561--37982	399	3.7	398	86	8	2181	42	16	14	27	1.87
37179--37917	178	4.0	178	91	3	1082	42	16	14	26	1.87
37535--37982	199	2.3	199	95	0	815	41	16	14	26	1.87
38360--38401	15	2.8	15	85	0	57	19	50	2	28	1.60
39563--39627	3	21.7	3	83	0	85	40	1	29	29	1.66
41011--42166	201	5.8	201	91	5	1890	44	14	14	26	1.84
41011--42166	404	2.9	402	94	3	1987	44	14	14	26	1.84
41746--42112	181	2.0	180	95	1	664	43	13	15	27	1.84
45144--45327	64	2.9	64	95	0	332	30	11	13	44	1.80
52933--53075	24	6.0	24	89	3	198	26	13	19	40	1.88
53191--53285	43	2.2	43	96	0	172	15	11	35	36	1.84
55318--55343	13	2.0	13	100	0	52	61	0	0	38	0.96
55938--55965	12	2.3	12	100	0	56	7	25	0	67	1.15
56977--57079	18	5.9	17	84	5	118	28	32	19	20	1.97
56977--57078	54	1.9	51	84	5	132	28	31	19	20	1.97
57497--57604	48	2.2	48	96	0	198	42	17	7	32	1.77
60648--60739	43	2.1	43	93	2	157	43	7	8	40	1.64

Tables:   1

The End!