genome.fa.s2201.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002201.1 Hibiscus syriacus cultivar Beakdansim tig00004488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180771

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5939--5993	27	2.1	27	86	6	78	47	0	16	36	1.47
6079--6136	26	2.2	26	93	0	98	34	12	6	46	1.68
7174--7207	13	2.8	12	91	8	52	14	2	41	41	1.61
12053--12084	17	1.9	16	93	6	55	75	0	0	25	0.81
12836--12872	14	2.6	14	86	0	56	32	0	24	43	1.55
19788--19851	26	2.5	26	82	5	76	65	18	4	10	1.41
20468--20523	19	3.0	18	78	14	60	26	3	0	69	1.04
33854--34174	79	4.1	79	90	0	480	28	23	11	37	1.90
33910--34121	34	5.6	34	69	22	127	28	24	12	34	1.91
33932--34166	45	5.7	44	69	21	177	28	24	12	34	1.92
34584--34635	22	2.5	22	84	6	72	34	26	9	28	1.88
34590--34634	22	2.0	23	91	4	74	35	26	8	28	1.87
34659--34710	20	2.6	20	87	6	70	19	28	17	34	1.94
35536--35618	25	3.3	24	66	21	62	28	10	15	44	1.80
35561--35639	25	3.1	26	65	24	69	27	8	17	45	1.78
35521--35639	51	2.4	50	92	2	202	26	12	17	43	1.85
36288--36462	89	2.0	89	96	0	323	41	7	11	39	1.69
37296--37396	45	2.2	45	87	0	139	10	16	33	38	1.84
37425--37488	3	22.0	3	93	6	114	67	0	0	32	0.91
40922--40949	6	4.7	6	100	0	56	0	0	14	85	0.59
41282--41335	23	2.3	24	78	12	60	44	5	7	42	1.55
43128--43201	10	7.8	9	70	16	51	77	1	4	17	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43086--43211	56	2.2	57	82	13	145	73	1	8	16	1.16
43150--43256	35	3.0	35	80	11	96	68	0	4	27	1.09
43211--43278	2	34.5	2	82	8	86	55	0	1	42	1.08
43176--43266	39	2.2	43	86	7	127	62	0	2	35	1.07
43297--43359	25	2.5	24	80	10	63	68	3	3	25	1.19
43298--43354	26	2.2	26	84	6	71	68	3	1	26	1.15
44553--44783	36	6.6	36	78	12	219	39	13	20	25	1.90
44584--44770	102	1.8	102	84	6	254	38	12	20	27	1.90
44821--45060	102	2.4	102	86	1	320	36	11	18	32	1.87
44970--45143	88	2.0	87	91	1	285	35	12	19	33	1.89
45405--45620	106	2.0	106	84	0	279	22	19	25	32	1.98
46198--46317	32	3.7	31	82	6	141	35	20	14	30	1.92
48987--49019	10	3.4	10	83	8	50	87	0	12	0	0.53
48980--49019	19	2.2	19	95	4	73	87	0	12	0	0.54
49016--49072	17	3.2	17	75	22	55	73	0	1	24	0.92
49014--49106	28	3.1	28	79	13	82	69	0	2	27	0.99
49023--49159	69	2.0	69	81	12	165	66	0	2	30	1.09
49114--49171	27	2.2	27	87	3	82	68	1	1	27	1.08
59559--59633	32	2.3	32	83	4	87	30	16	20	33	1.94
60582--60623	21	2.0	21	86	9	59	40	0	0	59	0.97
62435--62478	21	2.1	21	83	8	54	25	29	27	18	1.98
64014--64058	21	2.1	21	87	0	63	31	28	24	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64643--64677	18	1.9	18	88	11	54	54	5	17	22	1.64
65482--65785	149	2.0	149	98	0	581	27	17	20	34	1.95
65764--65808	23	2.0	23	86	0	63	20	24	28	26	1.99
69525--69559	18	1.9	18	88	11	54	54	5	17	22	1.64
70363--70666	149	2.0	149	98	0	581	27	17	20	34	1.95
70645--70689	23	2.0	23	86	0	63	20	24	28	26	1.99
78561--78646	27	3.2	27	67	23	81	33	26	16	23	1.95
78542--78694	54	2.8	54	90	0	225	35	22	16	24	1.95
79252--79281	2	15.0	2	92	0	51	50	3	46	0	1.18
83236--83273	18	2.1	18	100	0	76	42	10	10	36	1.74
91679--91707	4	7.2	4	100	0	58	27	0	48	24	1.51
98656--98756	33	3.1	33	94	2	168	45	16	7	29	1.76
99842--99885	4	11.2	4	80	4	54	68	0	0	31	0.90
99843--99882	8	5.0	8	93	0	71	65	0	0	35	0.93
99842--99903	16	3.9	16	83	10	65	69	0	1	29	0.98
101416--102054	84	7.7	83	79	5	670	24	19	24	31	1.98
101344--102054	249	2.9	248	88	2	1014	24	18	23	33	1.97
101412--102054	165	3.9	164	78	6	632	25	18	24	31	1.98
104803--104845	19	2.3	19	95	0	77	16	23	20	39	1.92
106053--106077	8	3.1	8	100	0	50	76	0	24	0	0.80
106087--106120	3	11.7	3	93	6	61	67	0	0	32	0.91
110935--111160	103	2.2	103	96	0	416	26	13	23	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115602--115644	22	2.0	22	100	0	86	9	23	48	18	1.76
115643--115720	19	4.1	19	88	8	113	28	29	24	17	1.98
115641--115719	9	8.3	9	79	10	86	27	29	26	16	1.97
122901--122939	17	2.3	17	100	0	78	12	23	46	17	1.83
122881--122911	7	4.4	7	95	0	53	25	25	29	19	1.99
122937--123014	19	4.1	19	88	8	113	28	29	24	17	1.98
122935--123013	9	8.3	9	79	10	86	27	29	26	16	1.97
125662--125879	103	2.1	103	97	0	409	27	13	22	36	1.92
125886--125963	23	3.3	23	81	1	93	24	19	23	33	1.97
130746--130963	103	2.1	103	98	0	418	27	13	23	36	1.92
130979--131037	23	2.6	23	83	0	82	18	23	28	28	1.98
131889--131923	3	11.7	3	100	0	70	68	0	0	31	0.90
132107--132388	131	2.2	130	86	5	385	34	16	18	30	1.93
133435--134331	45	20.0	45	84	2	973	42	19	14	23	1.88
134537--134574	19	2.0	20	94	5	69	39	0	26	34	1.57
135812--135858	14	3.4	14	85	11	53	17	0	2	80	0.80
135828--135858	7	4.4	7	100	0	62	12	0	0	87	0.55
135817--135868	21	2.3	23	81	15	65	17	3	0	78	0.89
136803--136990	31	6.0	31	77	12	188	31	19	18	30	1.96
136837--136993	63	2.5	63	95	0	278	31	19	17	31	1.95
137928--138084	64	2.4	65	77	10	162	27	18	20	33	1.96
139670--139705	17	2.1	18	94	5	65	22	22	13	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141352--141516	30	5.4	30	77	11	165	31	18	18	30	1.95
141357--141519	62	2.7	61	92	3	258	31	18	18	31	1.95
142481--142634	64	2.4	65	81	8	174	27	20	19	32	1.97
144275--144299	13	1.9	13	100	0	50	8	32	0	60	1.26
145602--145682	23	3.6	23	89	3	128	18	28	25	27	1.98
148240--148281	17	2.5	17	88	0	57	50	9	16	23	1.75
151793--151914	64	1.9	64	86	0	172	35	20	18	26	1.95
151793--151955	64	2.5	63	81	7	168	33	20	20	26	1.97
152599--152657	23	2.6	23	91	0	91	22	25	25	27	2.00
157719--157788	31	2.3	31	92	2	115	25	30	11	32	1.91
159168--159244	31	2.5	30	85	4	118	24	24	14	36	1.93
166200--166242	16	2.7	16	96	0	77	44	4	6	44	1.52
170036--170060	3	8.3	3	100	0	50	68	0	0	32	0.90
170479--170575	21	4.6	21	75	0	86	31	14	14	39	1.86
170480--170561	42	2.0	42	87	4	121	30	14	15	39	1.88
170480--170575	42	2.3	42	83	7	115	31	14	14	39	1.86
173336--173364	2	14.5	2	100	0	58	51	0	0	48	1.00
173831--173885	21	2.6	21	79	0	65	27	16	12	43	1.84
174035--174096	2	31.0	2	100	0	124	50	0	0	50	1.00
174247--174307	31	2.0	31	86	0	86	39	8	19	32	1.81

Tables:   1

The End!