Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002202.1 Hibiscus syriacus cultivar Beakdansim tig00004489_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 133808
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:3379 original size:45 final size:45
Alignment explanation
Indices: 3315--3495 Score: 301
Period size: 45 Copynumber: 4.0 Consensus size: 45
3305 TGGAGCTCTA
* *
3315 CCTCCACTTCCTACCATGCCAACATTGCCTACCATGCCATCCATC
1 CCTCCACTTCCTAGCATGCCAACATTGCCAACCATGCCATCCATC
* *
3360 CCTCCACTTCCTAGCATGCC-ATATTGCCTACCATGCCATCCATC
1 CCTCCACTTCCTAGCATGCCAACATTGCCAACCATGCCATCCATC
*
3404 CCTCCACTTCCTAGTATGCCAACATTGCCAACCATGCCATCCATC
1 CCTCCACTTCCTAGCATGCCAACATTGCCAACCATGCCATCCATC
*
3449 CCTCCACTTCCTAGTATGCCAACATTGCCAACCATGCCATCCATC
1 CCTCCACTTCCTAGCATGCCAACATTGCCAACCATGCCATCCATC
3494 CC
1 CC
3496 CACAATACCA
Statistics
Matches: 130, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
44 42 0.32
45 88 0.68
ACGTcount: A:0.23, C:0.44, G:0.08, T:0.25
Consensus pattern (45 bp):
CCTCCACTTCCTAGCATGCCAACATTGCCAACCATGCCATCCATC
Found at i:3468 original size:89 final size:90
Alignment explanation
Indices: 3315--3495 Score: 301
Period size: 89 Copynumber: 2.0 Consensus size: 90
3305 TGGAGCTCTA
*
3315 CCTCCACTTCCTACCATGCCAACATTGCCTACCATGCCATCCATCCCTCCACTTCCTAGCATGCC
1 CCTCCACTTCCTACCATGCCAACATTGCCAACCATGCCATCCATCCCTCCACTTCCTAGCATGCC
* *
3380 -ATATTGCCTACCATGCCATCCATC
66 AACATTGCCAACCATGCCATCCATC
** *
3404 CCTCCACTTCCTAGTATGCCAACATTGCCAACCATGCCATCCATCCCTCCACTTCCTAGTATGCC
1 CCTCCACTTCCTACCATGCCAACATTGCCAACCATGCCATCCATCCCTCCACTTCCTAGCATGCC
3469 AACATTGCCAACCATGCCATCCATC
66 AACATTGCCAACCATGCCATCCATC
3494 CC
1 CC
3496 CACAATACCA
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 61 0.72
90 24 0.28
ACGTcount: A:0.23, C:0.44, G:0.08, T:0.25
Consensus pattern (90 bp):
CCTCCACTTCCTACCATGCCAACATTGCCAACCATGCCATCCATCCCTCCACTTCCTAGCATGCC
AACATTGCCAACCATGCCATCCATC
Found at i:8824 original size:16 final size:17
Alignment explanation
Indices: 8792--8826 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
8782 AAATAATTTT
*
8792 ATTATTATTTATTTTAA
1 ATTATTATTTATATTAA
8809 ATTATT-TTTATATTAA
1 ATTATTATTTATATTAA
8825 AT
1 AT
8827 AATAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTATTATTTATATTAA
Found at i:10244 original size:18 final size:19
Alignment explanation
Indices: 10215--10265 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
10205 ATAATAAATG
*
10215 GATAAATAAATAAA-CAAA
1 GATAAGTAAATAAATCAAA
* *
10233 TATGAGTAAATAAATCAAA
1 GATAAGTAAATAAATCAAA
*
10252 GATAAGAAAATAAA
1 GATAAGTAAATAAA
10266 GAAAATAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.67, C:0.04, G:0.10, T:0.20
Consensus pattern (19 bp):
GATAAGTAAATAAATCAAA
Found at i:10291 original size:15 final size:16
Alignment explanation
Indices: 10271--10300 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10261 ATAAAGAAAA
10271 TAAATAAAT-AGATAC
1 TAAATAAATAAGATAC
10286 TAAATAAATAAGATA
1 TAAATAAATAAGATA
10301 GGTAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (16 bp):
TAAATAAATAAGATAC
Found at i:10309 original size:19 final size:19
Alignment explanation
Indices: 10267--10311 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
10257 GAAAATAAAG
10267 AAAATAAATAAATAGATAC
1 AAAATAAATAAATAGATAC
* *
10286 TAAATAAATAAGATAGGTA-
1 AAAATAAATAA-ATAGATAC
10305 AAAATAA
1 AAAATAA
10312 TATGTACATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (19 bp):
AAAATAAATAAATAGATAC
Found at i:12711 original size:209 final size:210
Alignment explanation
Indices: 12411--13283 Score: 1524
Period size: 209 Copynumber: 4.2 Consensus size: 210
12401 TGTTTCGAGG
* * * *
12411 CCAATATCTTTCGCTATGAAGTTGAAATTGGCTCCTGAAATTGGGAAATTGTTTGTTGACAACCA
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCT-CTGAAATTGAGAAA-TGTTTGTTGACAACCA
* *
12476 GCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATTCGTTGTGAAGTT
64 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTT
12541 GAAATTGGCTCTGAATTTGAGAAATGTTTGTTGAC-ACCAGCGGTCCCTTCGTCGTGAAGTTGAA
129 GAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
12605 CTTGCGTTGTCTGGAGT
194 CTTGCGTTGTCTGGAGT
* *
12622 CCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGC
*
12687 GGTCCCTTCGTCGTGAAATTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
12752 AATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC-GTCCCTTCGTCGTGAAGTTGAACT
131 AATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
12816 TGCGTTGTCTGGAGT
196 TGCGTTGTCTGGAGT
*
12831 CCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTG-AATCTGAGAAATGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAAT-TGAGAAATGTTTGTTGACAACCAG
*
12895 CGGTCCCTTCGTCGTGAAGTTGAATTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
65 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
12960 AAATTGGCTCTGAATTTGAG-AATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
130 AAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
13024 TTGCGTTGTCTGGAGT
195 TTGCGTTGTCTGGAGT
* * *
13040 CCAATATCATTCGTTGTGAAGTTAAAATTGGCTCTGAAATTGAGAAATATTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGC
13105 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
* *
13170 AATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCATGAAGTTGAACT
131 AATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
*
13235 TGCGTTGTCTGGAAT
196 TGCGTTGTCTGGAGT
13250 CCAATATCCTTCG-T-TGAAGTTGAAATTGGCTCTG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
13284 GGTAAAACCT
Statistics
Matches: 633, Mismatches: 24, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
208 41 0.06
209 472 0.75
210 91 0.14
211 29 0.05
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (210 bp):
CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGC
GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
AATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
TGCGTTGTCTGGAGT
Found at i:12733 original size:105 final size:105
Alignment explanation
Indices: 12411--13283 Score: 1522
Period size: 105 Copynumber: 8.3 Consensus size: 105
12401 TGTTTCGAGG
* * * * *
12411 CCAATATCTTTCGCTATGAAGTTGAAATTGGCTCCTGAAATTGGGAAATTGTTTGTTGACAACCA
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCT-CTGAATTTGAGAAA-TGTTTGTTGACAACCA
*
12476 GCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
64 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
12518 CCAATATCATTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGAC-ACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
12582 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
12622 CCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
*
12687 GGTCCCTTCGTCGTGAAATTGAACTTGCGTTGTCTGGAGT
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
12727 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
12792 -GTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
12831 CCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATCTGAGAAATGTTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
*
12896 GGTCCCTTCGTCGTGAAGTTGAATTTGCGTTGTCTGGAGT
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
12936 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAG-AATGTTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
13000 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * * *
13040 CCAATATCATTCGTTGTGAAGTTAAAATTGGCTCTGAAATTGAGAAATATTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
13105 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
13145 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
* *
13210 GGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTGGAAT
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
13250 CCAATATCCTTCG-T-TGAAGTTGAAATTGGCTCTG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
13284 GGTAAAACCT
Statistics
Matches: 737, Mismatches: 26, Indels: 10
0.95 0.03 0.01
Matches are distributed among these distances:
103 20 0.03
104 303 0.41
105 372 0.50
106 12 0.02
107 30 0.04
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (105 bp):
CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGC
GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
Found at i:14060 original size:17 final size:16
Alignment explanation
Indices: 14038--14077 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
14028 TTATTTTCTC
14038 TTCTTTTATTT-TTTTT
1 TTCTTTT-TTTCTTTTT
14054 TTCCTTTTTTTCTTTTT
1 TT-CTTTTTTTCTTTTT
14071 TTCTTTT
1 TTCTTTT
14078 CTCAATTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (16 bp):
TTCTTTTTTTCTTTTT
Found at i:14061 original size:9 final size:8
Alignment explanation
Indices: 14038--14077 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
14028 TTATTTTCTC
14038 TTCTTTTAT
1 TTCTTTT-T
14047 TT-TTTTT
1 TTCTTTTT
14054 TTCCTTTTT
1 TT-CTTTTT
14063 TTCTTTTT
1 TTCTTTTT
14071 TTCTTTT
1 TTCTTTT
14078 CTCAATTTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 3 0.10
8 17 0.59
9 9 0.31
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (8 bp):
TTCTTTTT
Found at i:14064 original size:20 final size:21
Alignment explanation
Indices: 14031--14072 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
14021 ACCCACCTTA
14031 TTTTCTCTTCTTTTATTTTTT
1 TTTTCTCTTCTTTTATTTTTT
* *
14052 TTTTC-CTTTTTTTCTTTTTT
1 TTTTCTCTTCTTTTATTTTTT
14072 T
1 T
14073 CTTTTCTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTCTCTTCTTTTATTTTTT
Found at i:24630 original size:10 final size:10
Alignment explanation
Indices: 24615--24649 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
24605 TAAATCAAAG
24615 ATAAAGAAAA
1 ATAAAGAAAA
24625 ATAAAGAAAA
1 ATAAAGAAAA
*
24635 ATAAATAAATA
1 ATAAAGAAA-A
24646 ATAA
1 ATAA
24650 CTAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 18 0.78
11 5 0.22
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (10 bp):
ATAAAGAAAA
Found at i:24656 original size:15 final size:14
Alignment explanation
Indices: 24623--24661 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
24613 AGATAAAGAA
*
24623 AAATAAAGAAAAAT
1 AAATAAATAAAAAT
*
24637 AAATAAATAATAACT
1 AAATAAATAA-AAAT
24652 AAATAAATAA
1 AAATAAATAA
24662 GATAAGGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (14 bp):
AAATAAATAAAAAT
Found at i:24924 original size:2 final size:2
Alignment explanation
Indices: 24917--24959 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
24907 ACAATAAAAG
**
24917 TA TA TA TA TA TA TA TA TA TA TA TA T- TA CC TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24958 TA
1 TA
24960 GGTAATATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:25029 original size:27 final size:26
Alignment explanation
Indices: 24999--25066 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 26
24989 AAAAGAAAAT
*
24999 AATAACAATATATATACAATAATAATA
1 AATAACAATATATATACAA-AACAATA
* * *
25026 AATAAAAATATGTGTACAAAACAATA
1 AATAACAATATATATACAAAACAATA
*
25052 AAT-ACGATATATATA
1 AATAACAATATATATA
25067 TATATATATA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
25 8 0.24
26 9 0.27
27 16 0.48
ACGTcount: A:0.60, C:0.07, G:0.04, T:0.28
Consensus pattern (26 bp):
AATAACAATATATATACAAAACAATA
Found at i:25065 original size:2 final size:2
Alignment explanation
Indices: 25058--25096 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
25048 AATAAATACG
25058 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25097 AAATACATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26801 original size:2 final size:2
Alignment explanation
Indices: 26794--26827 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26784 TATTTAATAA
26794 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26828 TTTTTTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29415 original size:51 final size:50
Alignment explanation
Indices: 29340--29466 Score: 141
Period size: 50 Copynumber: 2.5 Consensus size: 50
29330 TTAGCAGTAA
* * **
29340 AGCGC-CCCCCTGCACCGCGTTATACGATGATTTGGCACCACGTGGGGTAT
1 AGCGCGCCCTCTGCACCGCGCTATACGATGAGCTGGCACCACGT-GGGTAT
* *
29390 AGCGCGCCCTCTGCACCGCGCTATACGGTGAGCTGGCGCCACGTGGGTAT
1 AGCGCGCCCTCTGCACCGCGCTATACGATGAGCTGGCACCACGTGGGTAT
* * *
29440 AGCACG-GCTCCTGCAGCGCGCTATACG
1 AGCGCGCCCT-CTGCACCGCGCTATACG
29467 TCACGTAGGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 2 0.03
50 32 0.48
51 32 0.48
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.19
Consensus pattern (50 bp):
AGCGCGCCCTCTGCACCGCGCTATACGATGAGCTGGCACCACGTGGGTAT
Found at i:29460 original size:50 final size:50
Alignment explanation
Indices: 29346--29466 Score: 145
Period size: 51 Copynumber: 2.4 Consensus size: 50
29336 GTAAAGCGCC
* ** *
29346 CCCCTGCACCGCGTTATACGATGATTTGGCACCACGTGGGGTATAGCGCG
1 CCCCTGCACCGCGCTATACGATGAGCTGGCACCACGTGGGGTATAGCACG
* *
29396 CCCTCTGCACCGCGCTATACGGTGAGCTGGCGCCACGT-GGGTATAGCACGG
1 CCC-CTGCACCGCGCTATACGATGAGCTGGCACCACGTGGGGTATAGCAC-G
* *
29447 CTCCTGCAGCGCGCTATACG
1 CCCCTGCACCGCGCTATACG
29467 TCACGTAGGA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 29 0.48
51 32 0.52
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.20
Consensus pattern (50 bp):
CCCCTGCACCGCGCTATACGATGAGCTGGCACCACGTGGGGTATAGCACG
Found at i:29547 original size:47 final size:49
Alignment explanation
Indices: 29478--29598 Score: 149
Period size: 51 Copynumber: 2.5 Consensus size: 49
29468 CACGTAGGAG
**
29478 TATAGCGCGGATCAGGTACCGCG-CTATACCTTTA-CTG-CATAATTTTA
1 TATAGCGCGGGGCAGGTACCGCGAC-ATACCTTTACCTGACATAATTTTA
* *
29525 TATAGCGTGTGGCAGGTACCGCGACATACCTTTACTCCTGACATAATTTTA
1 TATAGCGCGGGGCAGGTACCGCGACATACCTTTA--CCTGACATAATTTTA
*
29576 TATAGCGCGGGGCATGTACCGCG
1 TATAGCGCGGGGCAGGTACCGCG
29599 TTTTGTATAA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
47 28 0.45
48 1 0.02
50 3 0.05
51 30 0.48
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (49 bp):
TATAGCGCGGGGCAGGTACCGCGACATACCTTTACCTGACATAATTTTA
Found at i:31839 original size:51 final size:49
Alignment explanation
Indices: 31763--31890 Score: 148
Period size: 51 Copynumber: 2.5 Consensus size: 49
31753 TTAGCAGTAA
* **
31763 AGCGCGCCCCCTGCACCGCGTTATACGATGATTTGGCACCACGTGGGGTAT
1 AGCGCG-CCCCTGCACCGCGCTATACGATGAGCTGGCACCACGT-GGGTAT
* *
31814 AGCGCGCCCCTTGCACCGCGCTATACGGTGAGCTGGCGCCACGTGGGTAT
1 AGCGCGCCCC-TGCACCGCGCTATACGATGAGCTGGCACCACGTGGGTAT
* * *
31864 AGCACGGCTCCTGCAGCGCGCTATACG
1 AGCGC-GCCCCTGCACCGCGCTATACG
31891 TCACGTAGGA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
50 29 0.43
51 38 0.57
ACGTcount: A:0.16, C:0.34, G:0.31, T:0.19
Consensus pattern (49 bp):
AGCGCGCCCCTGCACCGCGCTATACGATGAGCTGGCACCACGTGGGTAT
Found at i:31971 original size:47 final size:49
Alignment explanation
Indices: 31914--32024 Score: 145
Period size: 51 Copynumber: 2.3 Consensus size: 49
31904 TAGCGCGGAT
*
31914 CAGGTACCGCGTTATACCTTTA-CTG-CATAATTTTATATAGCGTAGGG
1 CAGGTACCGCGTTATACCTTTACCTGACATAATTTTATATAGCGCAGGG
** *
31961 CAGGTACCGCGACATACCTTTACTCCTGACATAATTTTATATAGCGCGGGG
1 CAGGTACCGCGTTATACCTTTA--CCTGACATAATTTTATATAGCGCAGGG
*
32012 CATGTACCGCGTT
1 CAGGTACCGCGTT
32025 TTGTATAACT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 20 0.38
50 3 0.06
51 30 0.57
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (49 bp):
CAGGTACCGCGTTATACCTTTACCTGACATAATTTTATATAGCGCAGGG
Found at i:35858 original size:110 final size:113
Alignment explanation
Indices: 35652--35869 Score: 325
Period size: 110 Copynumber: 1.9 Consensus size: 113
35642 ATTACAAAAA
* * * *
35652 TTAATTCTTAATCTAATAATCATGCATTAAATGAATCAACTAATTATTAATAATAATTTAAATTA
1 TTAATTATTAATATAATAATCATGCATTAAATAAATCAACTAAATATTAATAATAA-TT--ATTA
35717 AATTAAATTAAAACATTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
63 AATTAAATTAAAACATTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
*
35768 TTAATTATTAATATAATAATCATGCATTAAATAAAT-AACTAAATATTACTAATAA-T-TTAAAT
1 TTAATTATTAATATAATAATCATGCATTAAATAAATCAACTAAATATTAATAATAATTATTAAAT
**
35830 TAAATTAAAATGTTAAAATGTTACCGTATCAGCAAAGTGT
66 TAAATTAAAACATTAAAATGTTACCGTATCAGCAAAGTGT
35870 AGAAATATAT
Statistics
Matches: 95, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
110 44 0.46
113 1 0.01
115 17 0.18
116 33 0.35
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (113 bp):
TTAATTATTAATATAATAATCATGCATTAAATAAATCAACTAAATATTAATAATAATTATTAAAT
TAAATTAAAACATTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
Found at i:36015 original size:12 final size:10
Alignment explanation
Indices: 36001--36041 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
35991 ACCTTAAAAA
*
36001 GAGAGTATTT
1 GAGAGAATTT
36011 GAGAGAAATTT
1 GAGAG-AATTT
36022 -AGAGAATTT
1 GAGAGAATTT
36031 GAGAGAATTT
1 GAGAGAATTT
36041 G
1 G
36042 GTGTGATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 5 0.18
10 19 0.68
11 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (10 bp):
GAGAGAATTT
Found at i:37184 original size:29 final size:30
Alignment explanation
Indices: 37149--37229 Score: 94
Period size: 28 Copynumber: 2.7 Consensus size: 30
37139 CTCGAATTTT
*
37149 TTTTAAAAAAATCCGACCCTATCCCAA-AA
1 TTTTAAAAAAATCCGACCCGATCCCAATAA
* **
37178 TTTTAAAAAAA-ACGACCCGATCCCAATTTT
1 TTTTAAAAAAATCCGACCCGATCCCAA-TAA
37208 TTTTAAAAAAAATCCGACCCGA
1 TTTT-AAAAAAATCCGACCCGA
37230 ATACCAAAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
28 13 0.30
29 11 0.26
30 4 0.09
31 7 0.16
32 8 0.19
ACGTcount: A:0.43, C:0.25, G:0.06, T:0.26
Consensus pattern (30 bp):
TTTTAAAAAAATCCGACCCGATCCCAATAA
Found at i:46871 original size:15 final size:15
Alignment explanation
Indices: 46851--46879 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
46841 ATGACCAAGG
46851 TAAATTTCAAGTTCA
1 TAAATTTCAAGTTCA
46866 TAAATTTCAAGTTC
1 TAAATTTCAAGTTC
46880 GTAATTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (15 bp):
TAAATTTCAAGTTCA
Found at i:48222 original size:22 final size:24
Alignment explanation
Indices: 48168--48228 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
48158 ATAAAGTTCA
* *
48168 ATAAATTTTAATGTTTATTTTTTTT
1 ATAAA-TTTAATGATTATTTTTATT
48193 ATAAAATTTAATGATTA-TTTTATT
1 AT-AAATTTAATGATTATTTTTATT
48217 AT-AATTTAATGA
1 ATAAATTTAATGA
48229 ATTTAATAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 10 0.30
24 8 0.24
25 12 0.36
26 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (24 bp):
ATAAATTTAATGATTATTTTTATT
Found at i:48259 original size:28 final size:31
Alignment explanation
Indices: 48196--48272 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
48186 TTTTTTTATA
48196 AAATTTAAT-GATTATTTTATTATAATTTAAT
1 AAATTTAATAG-TTATTTTATTATAATTTAAT
* *
48227 GAATTTAATAGTTATTTTA-TAT-ATTT-TT
1 AAATTTAATAGTTATTTTATTATAATTTAAT
*
48255 AAATTTTATAGTATATTT
1 AAATTTAATAGT-TATTT
48273 AAACGTAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 11 0.28
29 9 0.22
30 3 0.08
31 16 0.40
32 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (31 bp):
AAATTTAATAGTTATTTTATTATAATTTAAT
Found at i:48262 original size:17 final size:18
Alignment explanation
Indices: 48240--48275 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
48230 TTTAATAGTT
*
48240 ATTTTATA-TATTTTTAA
1 ATTTTATAGTATATTTAA
48257 ATTTTATAGTATATTTAA
1 ATTTTATAGTATATTTAA
48275 A
1 A
48276 CGTAGTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
ATTTTATAGTATATTTAA
Found at i:50576 original size:2 final size:2
Alignment explanation
Indices: 50569--50595 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
50559 TGCAGATGAT
50569 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
50596 TATTGTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:52072 original size:42 final size:42
Alignment explanation
Indices: 52013--52096 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
52003 TTGGTATTGT
52013 AGGGAAGGATGGCATGGTAGGCAATGTTGGCATGCTAGGAAG
1 AGGGAAGGATGGCATGGTAGGCAATGTTGGCATGCTAGGAAG
*
52055 AGGGACGGATGGCATGGTAGGCAATGTTGGCATGCTAGGAAG
1 AGGGAAGGATGGCATGGTAGGCAATGTTGGCATGCTAGGAAG
52097 TGGAGGCAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.27, C:0.11, G:0.43, T:0.19
Consensus pattern (42 bp):
AGGGAAGGATGGCATGGTAGGCAATGTTGGCATGCTAGGAAG
Found at i:53877 original size:20 final size:20
Alignment explanation
Indices: 53854--53920 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
53844 GTTTCCAATT
* *
53854 TCGCAACGTGAATCTGTAAA
1 TCGCAACGCGAATTTGTAAA
*
53874 TCGCAATGCGAATTTGTAAA
1 TCGCAACGCGAATTTGTAAA
*
53894 TCGCAACGCGAATTTATAAA
1 TCGCAACGCGAATTTGTAAA
53914 TCGCAAC
1 TCGCAAC
53921 ACAGAAGTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGAATTTGTAAA
Found at i:53937 original size:20 final size:19
Alignment explanation
Indices: 53894--54000 Score: 81
Period size: 20 Copynumber: 5.4 Consensus size: 19
53884 AATTTGTAAA
* * *
53894 TCGCAACGCGAATTTATAAA
1 TCGCAACGCGAAGTCA-AAT
*
53914 TCGCAACACAGAAGTCAAAT
1 TCGCAACGC-GAAGTCAAAT
*
53934 TCGCAACGCGATAGTAAAAT
1 TCGCAACGCGA-AGTCAAAT
*
53954 TCGCAACGCGGAATTTCAAAT
1 TCGCAACGC-GAA-GTCAAAT
* *
53975 TCGCAAC-TGAATTTCAAAT
1 TCGCAACGCGAA-GTCAAAT
53994 TCGCAAC
1 TCGCAAC
54001 AGGTTTTAGT
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
19 20 0.27
20 35 0.47
21 19 0.26
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.22
Consensus pattern (19 bp):
TCGCAACGCGAAGTCAAAT
Found at i:53988 original size:19 final size:19
Alignment explanation
Indices: 53928--54000 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 19
53918 AACACAGAAG
*
53928 TCAAATTCGCAACGCG-ATAG
1 TCAAATTCGCAACG-GAAT-T
*
53948 TAAAATTCGCAACGCGGAATT
1 TCAAATTCGCAA--CGGAATT
*
53969 TCAAATTCGCAACTGAATT
1 TCAAATTCGCAACGGAATT
53988 TCAAATTCGCAAC
1 TCAAATTCGCAAC
54001 AGGTTTTAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
19 19 0.41
20 11 0.24
21 12 0.26
22 4 0.09
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (19 bp):
TCAAATTCGCAACGGAATT
Found at i:54172 original size:14 final size:15
Alignment explanation
Indices: 54153--54190 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
54143 TTCCCATCTC
54153 TAATTTTTTT-TACA
1 TAATTTTTTTCTACA
*
54167 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
54183 TAATTTTT
1 TAATTTTT
54191 CAATGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:54248 original size:20 final size:20
Alignment explanation
Indices: 54225--54264 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
54215 AACTATCAAT
*
54225 GCGAATTTGTAAATCGCAAC
1 GCGAATTTATAAATCGCAAC
54245 GCGAATTTATAAATCGCAAC
1 GCGAATTTATAAATCGCAAC
54265 ACAGAAGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (20 bp):
GCGAATTTATAAATCGCAAC
Found at i:54281 original size:20 final size:19
Alignment explanation
Indices: 54238--54344 Score: 81
Period size: 20 Copynumber: 5.4 Consensus size: 19
54228 AATTTGTAAA
* * *
54238 TCGCAACGCGAATTTATAAA
1 TCGCAACGCGAAGTCA-AAT
*
54258 TCGCAACACAGAAGTCAAAT
1 TCGCAACGC-GAAGTCAAAT
*
54278 TCGCAACGCGATAGTAAAAT
1 TCGCAACGCGA-AGTCAAAT
*
54298 TCGCAACGCGGAATTTCAAAT
1 TCGCAACGC-GAA-GTCAAAT
* *
54319 TCGCAAC-TGAATTTCAAAT
1 TCGCAACGCGAA-GTCAAAT
54338 TCGCAAC
1 TCGCAAC
54345 AGGTTTTAGT
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
19 20 0.27
20 35 0.47
21 19 0.26
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.22
Consensus pattern (19 bp):
TCGCAACGCGAAGTCAAAT
Found at i:54332 original size:19 final size:19
Alignment explanation
Indices: 54272--54344 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 19
54262 AACACAGAAG
*
54272 TCAAATTCGCAACGCG-ATAG
1 TCAAATTCGCAACG-GAAT-T
*
54292 TAAAATTCGCAACGCGGAATT
1 TCAAATTCGCAA--CGGAATT
*
54313 TCAAATTCGCAACTGAATT
1 TCAAATTCGCAACGGAATT
54332 TCAAATTCGCAAC
1 TCAAATTCGCAAC
54345 AGGTTTTAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
19 19 0.41
20 11 0.24
21 12 0.26
22 4 0.09
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (19 bp):
TCAAATTCGCAACGGAATT
Found at i:54535 original size:16 final size:15
Alignment explanation
Indices: 54500--54538 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
54490 TTCCCATCTC
*
54500 TAATTTTTTTTTACA
1 TAATTTTTTTCTACA
*
54515 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
54531 TAATTTTT
1 TAATTTTT
54539 CAATGATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:55100 original size:12 final size:12
Alignment explanation
Indices: 55079--55112 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
55069 ACCACATTTC
*
55079 CAATACCAAACA
1 CAATATCAAACA
55091 CAATATCAAACA
1 CAATATCAAACA
*
55103 CAATCTCAAA
1 CAATATCAAA
55113 ACCTACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:55288 original size:24 final size:24
Alignment explanation
Indices: 55238--55290 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
55228 GTATTCGAAA
* *
55238 TTGATCTTGGTCAATACCCGGACT
1 TTGATCTTGGGCAATACCCAGACT
* * *
55262 TTGATCTTGGGGAATACTCAGATT
1 TTGATCTTGGGCAATACCCAGACT
55286 TTGAT
1 TTGAT
55291 GATGTGATGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.38
Consensus pattern (24 bp):
TTGATCTTGGGCAATACCCAGACT
Found at i:57734 original size:20 final size:20
Alignment explanation
Indices: 57709--57844 Score: 131
Period size: 20 Copynumber: 7.1 Consensus size: 20
57699 AACGCGAAAA
*
57709 TCGCGTTGCGAATTTGGCTT
1 TCGCGTTGCGAATTTGACTT
57729 TCGCGTTGCGAATTTGACTT
1 TCGCGTTGCGAATTTGACTT
* **
57749 TCTCGTTATGAATTTGACTT
1 TCGCGTTGCGAATTTGACTT
* * *
57769 TCTCGTTGTGAATTTGACTA
1 TCGCGTTGCGAATTTGACTT
**
57789 TCGCAATGC----TT-A-TT
1 TCGCGTTGCGAATTTGACTT
*
57803 TCGCGTTGAGAATTTGACTT
1 TCGCGTTGCGAATTTGACTT
*
57823 TCGCGTTGCGAATTTAACTT
1 TCGCGTTGCGAATTTGACTT
57843 TC
1 TC
57845 AGTTGTACAT
Statistics
Matches: 94, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
14 7 0.07
15 1 0.01
16 2 0.02
18 2 0.02
19 1 0.01
20 81 0.86
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (20 bp):
TCGCGTTGCGAATTTGACTT
Found at i:58285 original size:18 final size:18
Alignment explanation
Indices: 58264--58300 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
58254 GTAATTGGAG
58264 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
58282 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
58300 T
1 T
58301 ATAAATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:58307 original size:24 final size:24
Alignment explanation
Indices: 58256--58308 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
58246 ATTCATATGT
* * *
58256 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATA
*
58280 AATTTGAGTTTGAATTTCAATATA
1 AATTTGAGTTTGAATTTAAATATA
58304 AATTT
1 AATTT
58309 TGGCTCCACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATA
Found at i:58647 original size:37 final size:39
Alignment explanation
Indices: 58606--58690 Score: 138
Period size: 37 Copynumber: 2.2 Consensus size: 39
58596 TCCGATGCTC
*
58606 ATCAAAATCCAAAGCTCATAT-GTGCCAAGTAAAAGG-A
1 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
*
58643 ATCAAAATCCAAATCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
58682 ATCAAAATC
1 ATCAAAATC
58691 TACAACTTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
37 20 0.45
38 14 0.32
39 10 0.23
ACGTcount: A:0.47, C:0.20, G:0.14, T:0.19
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
Found at i:58960 original size:20 final size:20
Alignment explanation
Indices: 58935--58984 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
58925 TTATTTCGTG
*
58935 TGCGAATTTGACTTTTGCGT
1 TGCGAATTTGACTTTAGCGT
*
58955 TGCGAATTTAACTTTAGCGT
1 TGCGAATTTGACTTTAGCGT
58975 TGCGAATTTG
1 TGCGAATTTG
58985 TACCTTCAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.20, C:0.14, G:0.24, T:0.42
Consensus pattern (20 bp):
TGCGAATTTGACTTTAGCGT
Found at i:59127 original size:14 final size:14
Alignment explanation
Indices: 59108--59141 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
59098 ATCAAATTAA
59108 ACAAAT-AACCTTTT
1 ACAAATCAA-CTTTT
59122 ACAAATCAACTTTT
1 ACAAATCAACTTTT
59136 ACAAAT
1 ACAAAT
59142 TAATTAATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:60023 original size:13 final size:13
Alignment explanation
Indices: 60005--60031 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
59995 GTATATGAAG
60005 CATCTCTCTGATC
1 CATCTCTCTGATC
60018 CATCTCTCTGATC
1 CATCTCTCTGATC
60031 C
1 C
60032 TTCAAGTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.41, G:0.07, T:0.37
Consensus pattern (13 bp):
CATCTCTCTGATC
Found at i:60568 original size:21 final size:21
Alignment explanation
Indices: 60544--60619 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
60534 GCGGACAAGA
*
60544 CCTCTTGAACGATGACAGGGG
1 CCTCTTGAACGATGAGAGGGG
* *
60565 CCTCTTGAACGGTGGGAGGGG
1 CCTCTTGAACGATGAGAGGGG
* *
60586 CTTCTTCG-ATGATGAGAGGGG
1 CCTCTT-GAACGATGAGAGGGG
*
60607 CCTATTGAACGAT
1 CCTCTTGAACGAT
60620 AGGAGACGTC
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 1 0.02
21 41 0.95
22 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.36, T:0.24
Consensus pattern (21 bp):
CCTCTTGAACGATGAGAGGGG
Found at i:60843 original size:15 final size:15
Alignment explanation
Indices: 60802--60844 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
60792 CGGGCCGCTG
*
60802 AAATAAATTAATACAT
1 AAATAAA-TAATAAAT
* *
60818 AAATCAGTAATAAAT
1 AAATAAATAATAAAT
60833 AAATAAATAATA
1 AAATAAATAATA
60845 CCGAAAAAAG
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (15 bp):
AAATAAATAATAAAT
Found at i:63866 original size:31 final size:31
Alignment explanation
Indices: 63831--64017 Score: 313
Period size: 31 Copynumber: 6.0 Consensus size: 31
63821 CCCGAAGGAC
* *
63831 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
63862 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
63893 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
*
63924 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
63955 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
63986 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
64017 C
1 C
64018 CCTCGACCCT
Statistics
Matches: 147, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
31 146 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:64858 original size:21 final size:21
Alignment explanation
Indices: 64828--64872 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
64818 ATTCTGTCGT
* *
64828 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
64849 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
64870 TTG
1 TTG
64873 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:65753 original size:20 final size:20
Alignment explanation
Indices: 65728--65970 Score: 171
Period size: 20 Copynumber: 12.2 Consensus size: 20
65718 CGTAAAAACG
65728 TTTGACTTTCGCGTTGCGAA
1 TTTGACTTTCGCGTTGCGAA
*
65748 TTTGAC-TTCTGTGTTGCG-A
1 TTTGACTTTC-GCGTTGCGAA
* *
65767 TTT-ACAAATTCACGTTGCGAA
1 TTTGAC--TTTCGCGTTGCGAA
*
65788 TTTGACTTAT-GTGTTGCGAA
1 TTTGACTT-TCGCGTTGCGAA
*
65808 TTTGACTATCGCGTTGCGAA
1 TTTGACTTTCGCGTTGCGAA
*
65828 TTTGACTATCGCGTTGCGAA
1 TTTGACTTTCGCGTTGCGAA
*
65848 TTTGACTATCGCGTTGCGAA
1 TTTGACTTTCGCGTTGCGAA
*
65868 TTTGAC-TTCTGTGTTGC-AA
1 TTTGACTTTC-GCGTTGCGAA
* **
65887 TTTATAAATTCGCGTTGCGAAA
1 TTT-GACTTTCGCGTTGCG-AA
* *** *
65909 TTGGAAAAT-GGGTTGCGAAA
1 TTTGACTTTCGCGTTGCG-AA
* *
65929 TTGGA-GTTCGCGTTGCGAA
1 TTTGACTTTCGCGTTGCGAA
**
65948 TTTGA-GATCGCGTTGCGAA
1 TTTGACTTTCGCGTTGCGAA
65967 TTTG
1 TTTG
65971 TTGGTCATTT
Statistics
Matches: 187, Mismatches: 22, Indels: 29
0.79 0.09 0.12
Matches are distributed among these distances:
18 2 0.01
19 39 0.21
20 125 0.67
21 15 0.08
22 6 0.03
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (20 bp):
TTTGACTTTCGCGTTGCGAA
Found at i:65794 original size:40 final size:40
Alignment explanation
Indices: 65736--65907 Score: 210
Period size: 40 Copynumber: 4.3 Consensus size: 40
65726 CGTTTGACTT
65736 TCGCGTTGCGAATTTGACTTCTGTGTTGCG-ATTT-ACAAA
1 TCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGAC-AA
* * *
65775 TTCACGTTGCGAATTTGACTTATGTGTTGCGAATTTGACTA
1 -TCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGACAA
* *
65816 TCGCGTTGCGAATTTGACTATC-GCGTTGCGAATTTGACTA
1 TCGCGTTGCGAATTTGACT-TCTGTGTTGCGAATTTGACAA
*
65856 TCGCGTTGCGAATTTGACTTCTGTGTTGC-AATTT-ATAAA
1 TCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGA-CAA
65895 TTCGCGTTGCGAA
1 -TCGCGTTGCGAA
65908 ATTGGAAAAT
Statistics
Matches: 117, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
38 1 0.01
39 8 0.07
40 100 0.85
41 6 0.05
42 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.38
Consensus pattern (40 bp):
TCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGACAA
Found at i:65805 original size:60 final size:60
Alignment explanation
Indices: 65728--65907 Score: 233
Period size: 60 Copynumber: 3.0 Consensus size: 60
65718 CGTAAAAACG
* *
65728 TTTGACTTTCGCGTTGCGAATTTGACTTCTGTGTTGCGATTTACAAATTCACGTTGCGAA
1 TTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCGATTTACAAATTCGCGTTGCGAA
* * *
65788 TTTGACTTAT-GTGTTGCGAATTTGACTATC-GCGTTGCGAATTTGAC-TA-TCGCGTTGCGAA
1 TTTGAC-TATCGCGTTGCGAATTTGACT-TCTGTGTTGCG-ATTT-ACAAATTCGCGTTGCGAA
* *
65848 TTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCAATTTATAAATTCGCGTTGCGAA
1 TTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCGATTTACAAATTCGCGTTGCGAA
65908 ATTGGAAAAT
Statistics
Matches: 102, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
58 1 0.01
59 10 0.10
60 80 0.78
61 9 0.09
62 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.39
Consensus pattern (60 bp):
TTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCGATTTACAAATTCGCGTTGCGAA
Found at i:65900 original size:80 final size:81
Alignment explanation
Indices: 65728--65952 Score: 227
Period size: 80 Copynumber: 2.8 Consensus size: 81
65718 CGTAAAAACG
* * *
65728 TTTGACT-TTCGCGTTGCGAATTTGACT-TCTGTGTTGCG-ATTT-ACAAATTCACGTTGCGAAT
1 TTTGACTATTCGCGTTGCGAATTTGACTATC-GCGTTGCGAATTTGAC-TA-TCGCGTTGCGAAT
65789 TTGACTTATGTGTTGCGAA
63 TTGACTTATGTGTTGCGAA
65808 TTTGACTA-TCGCGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTATCGCGTTGCGAATTTG
1 TTTGACTATTCGCGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTATCGCGTTGCGAATTTG
*
65872 ACTTCTGTGTTGC-AA
66 ACTTATGTGTTGCGAA
* ** * * *
65887 TTT-A-TAAATTCGCGTTGCGAAATTGGAAAAT-GGGTTGCGAAATTGGAGT-TCGCGTTGCGAA
1 TTTGACT--ATTCGCGTTGCG-AATTTGACTATCGCGTTGCG-AATTTGACTATCGCGTTGCGAA
65948 TTTGA
62 TTTGA
65953 GATCGCGTTG
Statistics
Matches: 126, Mismatches: 10, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
77 1 0.01
78 1 0.01
79 6 0.05
80 94 0.75
81 22 0.17
82 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.38
Consensus pattern (81 bp):
TTTGACTATTCGCGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTATCGCGTTGCGAATTTG
ACTTATGTGTTGCGAA
Found at i:65924 original size:60 final size:59
Alignment explanation
Indices: 65738--65970 Score: 201
Period size: 60 Copynumber: 3.9 Consensus size: 59
65728 TTTGACTTTC
* * * *
65738 GCGTTGCGAATTTGACTTCTGTGTTGCGATTTACAAATTCACGTTGCGAATTTGACTTAT
1 GCGTTGCGAATTTGACTTCTGTGTTGCAATTTATAAATTCGCGTTGCGAATTTGA-ATAT
* * *
65798 GTGTTGCGAATTTGACTATC-GCGTTGCGAATTTGACT--A-TCGCGTTGCGAATTTGACTAT
1 GCGTTGCGAATTTGACT-TCTGTGTTGC-AATTT-A-TAAATTCGCGTTGCGAATTTGAATAT
* *
65857 CGCGTTGCGAATTTGACTTCTGTGTTGCAATTTATAAATTCGCGTTGCGAAATTGGAAAAT
1 -GCGTTGCGAATTTGACTTCTGTGTTGCAATTTATAAATTCGCGTTGCG-AATTTGAATAT
* * * * * *
65918 GGGTTGCGAAATTGGAGTTC-GCGTTGCGAATTT-GAGA-TCGCGTTGCGAATTTG
1 GCGTTGCG-AATTTGACTTCTGTGTTGC-AATTTATAAATTCGCGTTGCGAATTTG
65971 TTGGTCATTT
Statistics
Matches: 143, Mismatches: 18, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
57 1 0.01
58 6 0.04
59 21 0.15
60 85 0.59
61 29 0.20
62 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.36
Consensus pattern (59 bp):
GCGTTGCGAATTTGACTTCTGTGTTGCAATTTATAAATTCGCGTTGCGAATTTGAATAT
Found at i:66904 original size:6 final size:6
Alignment explanation
Indices: 66893--66926 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
66883 TATTACCACG
66893 ACGACC ACGACC ACGACC ACGACC ACGACC ACGA
1 ACGACC ACGACC ACGACC ACGACC ACGACC ACGA
66927 GACACGAGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.35, C:0.47, G:0.18, T:0.00
Consensus pattern (6 bp):
ACGACC
Found at i:67427 original size:6 final size:6
Alignment explanation
Indices: 67418--67460 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
67408 CGCCGCCATC
67418 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
67461 AATGGTAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.16, G:0.49, T:0.35
Consensus pattern (6 bp):
TCGTGG
Found at i:67466 original size:6 final size:6
Alignment explanation
Indices: 67457--67487 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
67447 GTCGTGGTCG
67457 TGGTAA TGGTAA TGGTAA TGGTAA TGGTAA T
1 TGGTAA TGGTAA TGGTAA TGGTAA TGGTAA T
67488 ACGTGTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (6 bp):
TGGTAA
Found at i:67466 original size:12 final size:12
Alignment explanation
Indices: 67427--67478 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
67417 CTCGTGGTCG
**
67427 TGGTCGTGGTCG
1 TGGTCGTGGTAA
**
67439 TGGTCGTGGTCG
1 TGGTCGTGGTAA
67451 TGGTCGTGGTAA
1 TGGTCGTGGTAA
**
67463 TGGTAATGGTAA
1 TGGTCGTGGTAA
67475 TGGT
1 TGGT
67479 AATGGTAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.12, C:0.10, G:0.44, T:0.35
Consensus pattern (12 bp):
TGGTCGTGGTAA
Found at i:67466 original size:18 final size:18
Alignment explanation
Indices: 67427--67466 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
67417 CTCGTGGTCG
**
67427 TGGTCGTGGTCGTGGTCG
1 TGGTCGTGGTCGTGGTAA
67445 TGGTCGTGGTCGTGGTAA
1 TGGTCGTGGTCGTGGTAA
67463 TGGT
1 TGGT
67467 AATGGTAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.12, G:0.47, T:0.35
Consensus pattern (18 bp):
TGGTCGTGGTCGTGGTAA
Found at i:67660 original size:20 final size:20
Alignment explanation
Indices: 67635--67704 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
67625 ATTTTCAACT
67635 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
* **
67655 ATCGCAA--CGACACTGTAGACT
1 ATCGCAACGCGA-AATG--GAAA
67676 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
67696 ATCGCAACG
1 ATCGCAACG
67705 ACACTGTAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 18 0.46
21 9 0.23
22 3 0.08
23 3 0.08
ACGTcount: A:0.40, C:0.24, G:0.23, T:0.13
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:67661 original size:41 final size:41
Alignment explanation
Indices: 67632--67725 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
67622 GCGATTTTCA
67632 ACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTAG
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTAG
67673 ACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTAG
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTAG
67714 ACTATCGCAACG
1 ACTATCGCAACG
67726 ACATTTCGCG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (41 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTAG
Found at i:67681 original size:21 final size:21
Alignment explanation
Indices: 67655--67728 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
67645 GAAATGGAAA
67655 ATCGCAACGACACTGTAGACT
1 ATCGCAACGACACTGTAGACT
* **
67676 ATCGCAACG-CGAAATG--GAAA
1 ATCGCAACGAC--ACTGTAGACT
67696 ATCGCAACGACACTGTAGACT
1 ATCGCAACGACACTGTAGACT
67717 ATCGCAACGACA
1 ATCGCAACGACA
67729 TTTCGCGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
19 3 0.07
20 12 0.29
21 24 0.57
22 3 0.07
ACGTcount: A:0.38, C:0.27, G:0.20, T:0.15
Consensus pattern (21 bp):
ATCGCAACGACACTGTAGACT
Found at i:68521 original size:2 final size:2
Alignment explanation
Indices: 68509--68537 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
68499 AATAATTCAT
68509 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68538 AAATAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68899 original size:12 final size:12
Alignment explanation
Indices: 68882--68914 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
68872 TTATTTATAA
68882 TATTAATTTTTT
1 TATTAATTTTTT
*
68894 TATTAATATTTT
1 TATTAATTTTTT
68906 TATT-ATTTT
1 TATTAATTTT
68915 AATTGTAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TATTAATTTTTT
Found at i:72718 original size:13 final size:13
Alignment explanation
Indices: 72700--72728 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
72690 AACCTGGTCT
72700 TCTGAACATTTCC
1 TCTGAACATTTCC
72713 TCTGAACATTTCC
1 TCTGAACATTTCC
72726 TCT
1 TCT
72729 AAACTATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.31, G:0.07, T:0.41
Consensus pattern (13 bp):
TCTGAACATTTCC
Found at i:75323 original size:13 final size:14
Alignment explanation
Indices: 75305--75334 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
75295 GAACAACATC
75305 CAAGATCCAAGA-A
1 CAAGATCCAAGATA
75318 CAAGATCCAAGATA
1 CAAGATCCAAGATA
75332 CAA
1 CAA
75335 CTTCAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.53, C:0.23, G:0.13, T:0.10
Consensus pattern (14 bp):
CAAGATCCAAGATA
Found at i:81211 original size:23 final size:23
Alignment explanation
Indices: 81169--81244 Score: 88
Period size: 23 Copynumber: 3.4 Consensus size: 23
81159 TTAGTGCAGA
*
81169 GGGAATCGATACCCCC-TTGAAG
1 GGGAATCGATTCCCCCTTTGAAG
* *
81191 GGGAACCGATTCCCCCTTTGAAT
1 GGGAATCGATTCCCCCTTTGAAG
81214 GGGAATCGATTCCCTCCTTT--A-
1 GGGAATCGATTCCC-CCTTTGAAG
81235 GGGAATCGAT
1 GGGAATCGAT
81245 AACCCCACGA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
21 10 0.21
22 15 0.31
23 18 0.38
24 5 0.10
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (23 bp):
GGGAATCGATTCCCCCTTTGAAG
Found at i:81238 original size:21 final size:21
Alignment explanation
Indices: 81169--81244 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 21
81159 TTAGTGCAGA
* *
81169 GGGAATCGATACCCCCTTGAAG
1 GGGAATCGATTCCCCCTT-TAG
* *
81191 GGGAACCGATTCCCCCTTTGAAT
1 GGGAATCGATTCCCCCTTT--AG
81214 GGGAATCGATTCCCTCCTTTA-
1 GGGAATCGATTCCC-CCTTTAG
81235 GGGAATCGAT
1 GGGAATCGAT
81245 AACCCCACGA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
21 10 0.22
22 17 0.37
23 14 0.30
24 5 0.11
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (21 bp):
GGGAATCGATTCCCCCTTTAG
Found at i:86169 original size:25 final size:24
Alignment explanation
Indices: 86124--86180 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
86114 AACTTTATTG
86124 AACATTTTTCAAAATTATTTCATTA
1 AACATTTTTCAAAATTATTTCA-TA
* *
86149 AACATTATTT-AAATTTTTTTCATA
1 AACATT-TTTCAAAATTATTTCATA
86173 AAGCATTT
1 AA-CATTT
86181 CCAAAACTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 5 0.18
25 20 0.71
26 3 0.11
ACGTcount: A:0.39, C:0.11, G:0.02, T:0.49
Consensus pattern (24 bp):
AACATTTTTCAAAATTATTTCATA
Found at i:86542 original size:30 final size:31
Alignment explanation
Indices: 86506--86571 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
86496 AAGCGCCAAC
*
86506 TAGTACAAG-GACTTGACC-ACCAAGGTCAAA
1 TAGTACAAGAG-CTTAACCAACCAAGGTCAAA
* *
86536 TAGTACAAGAGCTTAACCAACCAATGTTAAA
1 TAGTACAAGAGCTTAACCAACCAAGGTCAAA
86567 TAGTA
1 TAGTA
86572 TAGGGACCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 15 0.48
31 16 0.52
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (31 bp):
TAGTACAAGAGCTTAACCAACCAAGGTCAAA
Found at i:98510 original size:8 final size:8
Alignment explanation
Indices: 98463--98517 Score: 53
Period size: 8 Copynumber: 7.0 Consensus size: 8
98453 AACAAAATGC
98463 TAAT-AAA
1 TAATAAAA
98470 TAA-AAAA
1 TAATAAAA
98477 TAATAATAA
1 TAATAA-AA
*
98486 TAATGAAA
1 TAATAAAA
*
98494 GAA-AGAAA
1 TAATA-AAA
98502 TAATAAAA
1 TAATAAAA
98510 TAATAAAA
1 TAATAAAA
98518 GGTTAAATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
7 9 0.23
8 22 0.56
9 8 0.21
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (8 bp):
TAATAAAA
Found at i:99724 original size:15 final size:14
Alignment explanation
Indices: 99697--99738 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
99687 AAATTAAGTT
99697 AATAAAATGAAATGA
1 AATAAAAT-AAATGA
*
99712 AATGAAATAAAATGA
1 AATAAAAT-AAATGA
99727 AATAAAATAAAT
1 AATAAAATAAAT
99739 ATTAATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (14 bp):
AATAAAATAAATGA
Found at i:99943 original size:40 final size:38
Alignment explanation
Indices: 99858--100000 Score: 122
Period size: 39 Copynumber: 3.9 Consensus size: 38
99848 AAATGATTTT
*
99858 AAAA-ATATTATATAAGTTTTCCAAAATGTTTTGTTAA
1 AAAATATATTATATAAATTTTCCAAAATGTTTTGTTAA
* *
99895 AACGATATATTATATAAATTTTCCCAAAATGTTTTTTTTAA
1 AA-AATATATTATATAAATTTT-CCAAAATG-TTTTGTTAA
* * *
99936 AAAATATA-TAT-TATATTTT-CAAAATG-ATT-TCAA
1 AAAATATATTATATAAATTTTCCAAAATGTTTTGTTAA
* *
99969 AACTATATATTACAT-AA-TTTCCAAAATGTTTT
1 AA-AATATATTATATAAATTTTCCAAAATGTTTT
100001 AAAACTTATA
Statistics
Matches: 86, Mismatches: 11, Indels: 19
0.74 0.09 0.16
Matches are distributed among these distances:
33 5 0.06
34 10 0.12
35 10 0.12
36 10 0.12
37 2 0.02
38 8 0.09
39 18 0.21
40 13 0.15
41 10 0.12
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.44
Consensus pattern (38 bp):
AAAATATATTATATAAATTTTCCAAAATGTTTTGTTAA
Found at i:99946 original size:76 final size:71
Alignment explanation
Indices: 99854--100000 Score: 165
Period size: 76 Copynumber: 2.0 Consensus size: 71
99844 TCAAAAATGA
* * *
99854 TTTTAAAAATATTATA-TA-AGTTTTCCAAAATGTTTTGTTAAAACGATATATTATATAAATTTT
1 TTTTAAAAATATTATATTATA-TTTT-CAAAATG-ATT-TCAAAACGATATATTACAT-AA-TTT
99917 CCCAAAATGTTTT
60 -CCAAAATGTTTT
*
99930 TTTTAAAAA-ATATATATTATATTTTCAAAATGATTTCAAAACTATATATTACATAATTTCCAAA
1 TTTTAAAAATAT-TATATTATATTTTCAAAATGATTTCAAAACGATATATTACATAATTTCCAAA
99994 ATGTTTT
65 ATGTTTT
100001 AAAACTTATA
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
71 12 0.19
72 3 0.05
73 2 0.03
74 16 0.25
75 4 0.06
76 20 0.31
77 6 0.09
78 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (71 bp):
TTTTAAAAATATTATATTATATTTTCAAAATGATTTCAAAACGATATATTACATAATTTCCAAAA
TGTTTT
Found at i:100011 original size:35 final size:32
Alignment explanation
Indices: 99930--100014 Score: 91
Period size: 35 Copynumber: 2.5 Consensus size: 32
99920 AAAATGTTTT
* *
99930 TTTTAAAAAATATATATTATATTTTCAAAATGA
1 TTTT-AAAACTATATATTATATTTCCAAAATGA
*
99963 TTTCAAAACTATATATTACATAATTTCCAAAATG-
1 TTTTAAAACTATATATT--AT-ATTTCCAAAATGA
99997 TTTTAAAACTTATATATT
1 TTTTAAAAC-TATATATT
100015 GTATATAAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
32 12 0.27
33 3 0.07
34 10 0.23
35 19 0.43
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (32 bp):
TTTTAAAACTATATATTATATTTCCAAAATGA
Found at i:107176 original size:3 final size:3
Alignment explanation
Indices: 107148--107236 Score: 144
Period size: 3 Copynumber: 29.7 Consensus size: 3
107138 AAAAAAAAAC
* *
107148 AAT AA- AAT ATT AAT AGT AATT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
107193 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
107237 CAACGAGACG
Statistics
Matches: 80, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.03
3 75 0.94
4 3 0.04
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:109231 original size:45 final size:49
Alignment explanation
Indices: 109177--109284 Score: 134
Period size: 50 Copynumber: 2.3 Consensus size: 49
109167 GTGTTAACTG
* *
109177 ATGCATAGTGATTTCGGGTA-CATA-AC-AT-TTTATCTATAATACCTA
1 ATGCATAGTGATTTCAGGTATCATATACTATATTTATATATAATACCTA
* *
109222 ATGCATAGTGATTTCAGGTATCCTATTCTTATATTTATATATAATACCTA
1 ATGCATAGTGATTTCAGGTATCATATAC-TATATTTATATATAATACCTA
*
109272 ATGCATAATGATT
1 ATGCATAGTGATT
109285 CTAGGTACCA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
45 19 0.36
46 3 0.06
47 1 0.02
49 2 0.04
50 28 0.53
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (49 bp):
ATGCATAGTGATTTCAGGTATCATATACTATATTTATATATAATACCTA
Found at i:109348 original size:3 final size:3
Alignment explanation
Indices: 109336--109411 Score: 145
Period size: 3 Copynumber: 25.7 Consensus size: 3
109326 TAATTCCAGG
109336 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
109383 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
109412 CCCAATGCGA
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 70 0.97
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:113414 original size:20 final size:20
Alignment explanation
Indices: 113386--113429 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
113376 ATAAGTCGAG
*
113386 AGATGTAGGGAAATAGAAAT
1 AGATATAGGGAAATAGAAAT
113406 AGATATAGGGAAATAGAAAT
1 AGATATAGGGAAATAGAAAT
113426 AGAT
1 AGAT
113430 GTTTATAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.27, T:0.20
Consensus pattern (20 bp):
AGATATAGGGAAATAGAAAT
Found at i:114458 original size:103 final size:103
Alignment explanation
Indices: 114274--114491 Score: 382
Period size: 103 Copynumber: 2.1 Consensus size: 103
114264 GTCGAGGGTC
114274 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTAAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTAAAGTCTGGTGAGACACATAC
* * *
114339 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGACCCCTAGCATATGTATATGATTCTTAAGGAATGA
* *
114377 TATGTGGTCTTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTAAAGTCTGGTGAGACACATAC
*
114442 TTGACCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGACCCCTAGCATATGTATATGATTCTTAAGGAATGA
114480 TATGTGGTCCTT
1 TATGTGGTCCTT
114492 ATGGATATTA
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 108 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTAAAGTCTGGTGAGACACATAC
TTGACCCCTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:114542 original size:23 final size:23
Alignment explanation
Indices: 114508--114575 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
114498 ATTATTATAT
114508 GGCACTAC-GGTGCAATTCTACGC
1 GGCACT-CTGGTGCAATTCTACGC
*
114531 GGCACTCTGGTGCAATTCTACGT
1 GGCACTCTGGTGCAATTCTACGC
*
114554 GGCACT-TCGGTGCAATTATACG
1 GGCACTCT-GGTGCAATTCTACG
114576 AGCTGTGGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
22 2 0.05
23 39 0.95
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
GGCACTCTGGTGCAATTCTACGC
Found at i:125231 original size:44 final size:44
Alignment explanation
Indices: 125183--125271 Score: 101
Period size: 44 Copynumber: 2.0 Consensus size: 44
125173 TCTAATTTGC
* *
125183 TAATAAATAATAAAAAATGA-TAAATTACTAATATATTAATT-TTA
1 TAATAAATAATAAAAAAT-ATTAAATCACTAAT-TACTAATTATTA
* * *
125227 TAATAGATAATTAAATATATTAAATCACTAATTACTAATTATTA
1 TAATAAATAATAAAAAATATTAAATCACTAATTACTAATTATTA
125271 T
1 T
125272 TTTAATTACA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
43 8 0.21
44 30 0.79
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (44 bp):
TAATAAATAATAAAAAATATTAAATCACTAATTACTAATTATTA
Found at i:125402 original size:46 final size:47
Alignment explanation
Indices: 125297--125392 Score: 124
Period size: 46 Copynumber: 2.0 Consensus size: 47
125287 TTTATAATTT
* * * *
125297 TTGATTAAATTTATTAATTTATGTTTAGACTTTGAATTTGTTTAATGTG
1 TTGA-TAAA-TTATTAATTTATGTTTAGACTTAGAATTTGATAAATGTA
125346 TTGATAAATTATT-ATTTATGTTTAGACTTAGAATTTGATAAAT-TA
1 TTGATAAATTATTAATTTATGTTTAGACTTAGAATTTGATAAATGTA
125391 TT
1 TT
125393 ATTTTAATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
45 3 0.07
46 27 0.63
47 5 0.12
48 4 0.09
49 4 0.09
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.53
Consensus pattern (47 bp):
TTGATAAATTATTAATTTATGTTTAGACTTAGAATTTGATAAATGTA
Found at i:125413 original size:24 final size:25
Alignment explanation
Indices: 125386--125446 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 25
125376 GAATTTGATA
*
125386 AATTATTATTTTAATTACA-CTATT
1 AATTATTATTTTAATTAAATCTATT
125410 AA-T-TTATGTTTAATTAAATCTATT
1 AATTATTAT-TTTAATTAAATCTATT
125434 AATTTATTCATTT
1 AA-TTATT-ATTT
125447 ATATTTATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
22 4 0.13
23 10 0.33
24 9 0.30
26 1 0.03
27 4 0.13
28 2 0.07
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.56
Consensus pattern (25 bp):
AATTATTATTTTAATTAAATCTATT
Found at i:125621 original size:15 final size:16
Alignment explanation
Indices: 125590--125635 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
125580 ACTCGATAAA
**
125590 AACTCGACTCGGGTTG
1 AACTCGACTCGACTTG
125606 -ACTCGACTCGACTTG
1 AACTCGACTCGACTTG
125621 AACTCGAGCTCGACT
1 AACTCGA-CTCGACT
125636 CGAAACCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 13 0.50
16 6 0.23
17 7 0.27
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (16 bp):
AACTCGACTCGACTTG
Found at i:129470 original size:21 final size:21
Alignment explanation
Indices: 129444--129493 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
129434 TAGAAATTCT
*
129444 CGAAGGACCACATATATATCC
1 CGAAGGACCACATAGATATCC
* * *
129465 CGAAGGACCATATAGATGTCT
1 CGAAGGACCACATAGATATCC
129486 CGAAGGAC
1 CGAAGGAC
129494 TAGTCCTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (21 bp):
CGAAGGACCACATAGATATCC
Found at i:129516 original size:2 final size:2
Alignment explanation
Indices: 129509--129575 Score: 118
Period size: 2 Copynumber: 34.0 Consensus size: 2
129499 CTTAAGGATC
*
129509 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
129551 AT AT AT AT AT AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
129576 TCCAAAAGAC
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 61 0.98
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (2 bp):
AT
Found at i:130561 original size:2 final size:2
Alignment explanation
Indices: 130492--130550 Score: 84
Period size: 2 Copynumber: 30.0 Consensus size: 2
130482 CCTTGTTATC
* * *
130492 AT AT GT AT AT AT GT GT AT AT AT AT AT AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130533 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
130551 TCACCATATA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
1 1 0.02
2 51 0.98
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
AT
Found at i:131080 original size:20 final size:20
Alignment explanation
Indices: 131033--131082 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
131023 ATACTCAATA
* * *
131033 GTATCGGTACTCCTTATATT
1 GTATCGATACTACTTATATG
* *
131053 GTACCGATACTACTTCTATG
1 GTATCGATACTACTTATATG
131073 GTATCGATAC
1 GTATCGATAC
131083 CCCTCCACAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (20 bp):
GTATCGATACTACTTATATG
Done.