Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002203.1 Hibiscus syriacus cultivar Beakdansim tig00004490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48299
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Found at i:1303 original size:12 final size:12
Alignment explanation
Indices: 1286--1310 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1276 ATTTTATTTG
1286 AATAATATAATA
1 AATAATATAATA
1298 AATAATATAATA
1 AATAATATAATA
1310 A
1 A
1311 TATATACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AATAATATAATA
Found at i:4881 original size:16 final size:15
Alignment explanation
Indices: 4843--4881 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
4833 TTATACAATA
*
4843 ATTTTTTATCATTTTT
1 ATTTTTT-TCATATTT
*
4859 ATTTTTTCCATATTT
1 ATTTTTTTCATATTT
4874 ATTTTTTT
1 ATTTTTTT
4882 TTTTTTTCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (15 bp):
ATTTTTTTCATATTT
Found at i:4962 original size:2 final size:2
Alignment explanation
Indices: 4914--4946 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
4904 TTATTTTATT
4914 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4947 ATTTGAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4988 original size:36 final size:36
Alignment explanation
Indices: 4948--5310 Score: 365
Period size: 36 Copynumber: 9.9 Consensus size: 36
4938 TATATTATAA
*
4948 TTTGAAAATATATATGATATATAG-TTTTAAAACATT
1 TTTGAAAATATATATAATATATAGTTTTTAAAACA-T
4984 TTTGAAACATATATAT--TATATAGTTTTTAAAACAT
1 TTTGAAA-ATATATATAATATATAGTTTTTAAAACAT
*
5019 TTTG-AAATATGTATAATATA-A-TTTTTAAAACAT
1 TTTGAAAATATATATAATATATAGTTTTTAAAACAT
5052 TTT-AAAATATATATAATATATAGTTTTTAAAACAT
1 TTTGAAAATATATATAATATATAGTTTTTAAAACAT
5087 TTTGAAAATATATATAATATATAGTTTTTAAAACAT
1 TTTGAAAATATATATAATATATAGTTTTTAAAACAT
5123 TTTGAAAAACATATATATATATATTATATAGTTTTTAAAACAT
1 TTTG---AA-A-ATATATATA-A-TATATAGTTTTTAAAACAT
* ** *
5166 TTTAAAAGCATATATATTTTTATATATTTTTTAAAA-AGTT
1 TTTGAAA--ATATATA-TAATATATAGTTTTTAAAACA--T
5206 TTTGAAAAATATATATAATATATAAGTTTTTAAAACAATT
1 TTTG-AAAATATATATAATATAT-AGTTTTTAAAAC-A-T
* *
5246 TTTGAAAATATATAT--TATATAGTTTTGAAAATTAT
1 TTTGAAAATATATATAATATATAGTTTTTAAAA-CAT
** *
5281 TTTTTAAACATATAT--TATATAG-TTTTAAAA
1 TTTGAAAATATATATAATATATAGTTTTTAAAA
5311 TGTTTATTAT
Statistics
Matches: 286, Mismatches: 17, Indels: 50
0.81 0.05 0.14
Matches are distributed among these distances:
33 37 0.13
34 11 0.04
35 51 0.18
36 64 0.22
37 13 0.05
38 7 0.02
39 46 0.16
40 20 0.07
41 14 0.05
42 1 0.00
43 22 0.08
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (36 bp):
TTTGAAAATATATATAATATATAGTTTTTAAAACAT
Found at i:5370 original size:19 final size:19
Alignment explanation
Indices: 5332--5369 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
5322 ATTATTATTA
5332 TATTTTATTTTACCTTTTT
1 TATTTTATTTTACCTTTTT
5351 TATTTT-TTATTA-CTTTTT
1 TATTTTATT-TTACCTTTTT
5369 T
1 T
5370 TTCTTTCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (19 bp):
TATTTTATTTTACCTTTTT
Found at i:6451 original size:16 final size:15
Alignment explanation
Indices: 6430--6472 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 15
6420 AATTTAATTT
6430 TTTATTTCATTTATTA
1 TTTATTT-ATTTATTA
6446 TTTATTTAATTTATTA
1 TTTATTT-ATTTATTA
6462 TTTATTTATTT
1 TTTATTTATTT
6473 TCGGTCTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTATTTATTTATTA
Found at i:6452 original size:4 final size:4
Alignment explanation
Indices: 6421--6472 Score: 56
Period size: 4 Copynumber: 13.0 Consensus size: 4
6411 CACTAGTTTA
6421 ATTT AATTT -TTT ATTT CATTT A-TT ATTT ATTT AATTT A-TT ATTT ATTT
1 ATTT -ATTT ATTT ATTT -ATTT ATTT ATTT ATTT -ATTT ATTT ATTT ATTT
6469 ATTT
1 ATTT
6473 TCGGTCTCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
3 9 0.21
4 21 0.50
5 12 0.29
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:6646 original size:22 final size:24
Alignment explanation
Indices: 6583--6654 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
6573 GAATTTAACC
* *
6583 TTTTGATGTTACTTTT-TTTTTTCC
1 TTTTCATGTTA-TTTTATTTTTTCA
*
6607 TTTTCATGTTATTCTATTTTTTCA
1 TTTTCATGTTATTTTATTTTTTCA
*
6631 TTTT-AT-TTTTTTTATTTTTTCA
1 TTTTCATGTTATTTTATTTTTTCA
6653 TT
1 TT
6655 GTTTTTATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 16 0.38
23 5 0.12
24 21 0.50
ACGTcount: A:0.12, C:0.10, G:0.04, T:0.74
Consensus pattern (24 bp):
TTTTCATGTTATTTTATTTTTTCA
Found at i:6665 original size:22 final size:22
Alignment explanation
Indices: 6595--6665 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
6585 TTGATGTTAC
*
6595 TTTT-TTTTTTCCTTTTCATGTTA
1 TTTTATTTTTTCATTTT-AT-TTA
* *
6618 TTCTATTTTTTCATTTTATTTT
1 TTTTATTTTTTCATTTTATTTA
6640 TTTTATTTTTTCATTGTT-TTTA
1 TTTTATTTTTTCATT-TTATTTA
6662 TTTT
1 TTTT
6666 TTCCTTTGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
22 23 0.56
23 7 0.17
24 11 0.27
ACGTcount: A:0.11, C:0.08, G:0.03, T:0.77
Consensus pattern (22 bp):
TTTTATTTTTTCATTTTATTTA
Found at i:9668 original size:22 final size:23
Alignment explanation
Indices: 9640--9695 Score: 73
Period size: 21 Copynumber: 2.5 Consensus size: 23
9630 AAGATAAGGG
*
9640 AAAAATAAAAAATGAAA-AAAAT
1 AAAAATAAAAAATAAAATAAAAT
9662 AAAAAT-AAAAATAAAATAAAAT
1 AAAAATAAAAAATAAAATAAAAT
9684 -AAAATGAAAAAA
1 AAAAAT-AAAAAA
9696 CGGAATAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 14 0.47
22 11 0.37
23 5 0.17
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (23 bp):
AAAAATAAAAAATAAAATAAAAT
Found at i:9682 original size:16 final size:16
Alignment explanation
Indices: 9641--9693 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
9631 AGATAAGGGA
*
9641 AAAATAAAAAATGAAA-
1 AAAAT-AAAAATAAAAT
9657 AAAATAAAAATAAAAAT
1 AAAATAAAAAT-AAAAT
9674 AAAAT-AAAATAAAAT
1 AAAATAAAAATAAAAT
9689 GAAAA
1 -AAAA
9694 AACGGAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 11 0.33
16 17 0.52
17 5 0.15
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (16 bp):
AAAATAAAAATAAAAT
Found at i:10692 original size:16 final size:15
Alignment explanation
Indices: 10666--10695 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10656 TTGTGAGGTC
10666 GGTCATCCCGGGATG
1 GGTCATCCCGGGATG
10681 GGTCAGTCCCGGGAT
1 GGTCA-TCCCGGGAT
10696 TCTGGCCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.27, G:0.40, T:0.20
Consensus pattern (15 bp):
GGTCATCCCGGGATG
Found at i:11041 original size:2 final size:2
Alignment explanation
Indices: 11030--11069 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
11020 TTTTAAAAAT
11030 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11070 GTGTGTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11041 original size:36 final size:36
Alignment explanation
Indices: 10967--11292 Score: 333
Period size: 36 Copynumber: 9.0 Consensus size: 36
10957 TTAAAAAATA
*
10967 ATTTTCAAAAATTGTTTTAAAAACTTATATATTATATAT
1 ATTTTC-AAAA-TGTTTTAAAAAC-TATATAATATATAT
*
11006 ATTTTTCAAAAATGTTTTAAAAATTATATAATATATAT
1 A-TTTTC-AAAATGTTTTAAAAACTATATAATATATAT
* * * * * * * *
11044 A-TAT--ATAT-ATATATATA-TATAT-ATATGTGT
1 ATTTTCAAAATGTTTTAAAAACTATATAATATATAT
* * *
11074 GTTTTTAAAATGTTTTAAAAACTGTATAATATATAT
1 ATTTTCAAAATGTTTTAAAAACTATATAATATATAT
* *
11110 GTTTTTCAAAATGTTTTAAAAACTATATATTATATAT
1 -ATTTTCAAAATGTTTTAAAAACTATATAATATATAT
* *
11147 ATTTTCAAAATGTTTTAAAAACTATATATTATACAT
1 ATTTTCAAAATGTTTTAAAAACTATATAATATATAT
11183 ATTTTCAAAATGTTTTAAAAACTATATAATATATAT
1 ATTTTCAAAATGTTTTAAAAACTATATAATATATAT
11219 ATGTTTTCAAAAATGTTTTAAAAACTATAT-ATCATATAT
1 A--TTTTC-AAAATGTTTTAAAAACTATATAAT-ATATAT
* * *
11258 ACTTTCAAAATGTTTTCAAAATTATATAATATATA
1 ATTTTCAAAATGTTTTAAAAACTATATAATATATA
11293 CATATATATA
Statistics
Matches: 243, Mismatches: 31, Indels: 29
0.80 0.10 0.10
Matches are distributed among these distances:
30 6 0.02
31 7 0.03
32 5 0.02
33 6 0.02
34 5 0.02
35 4 0.02
36 101 0.42
37 38 0.16
38 21 0.09
39 40 0.16
40 10 0.04
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.46
Consensus pattern (36 bp):
ATTTTCAAAATGTTTTAAAAACTATATAATATATAT
Found at i:12552 original size:7 final size:7
Alignment explanation
Indices: 12542--12566 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
12532 AAAACAATGA
12542 AAAAAAT
1 AAAAAAT
12549 AAAAAAT
1 AAAAAAT
12556 AAAAAAT
1 AAAAAAT
12563 AAAA
1 AAAA
12567 TAAAATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:12591 original size:23 final size:24
Alignment explanation
Indices: 12551--12608 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
12541 AAAAAAATAA
*
12551 AAAAT-AAAAAATAAAATAAAATG
1 AAAATGAAAAAACAAAATAAAATG
* *
12574 -AAATGAAAAAACAGAATAACATG
1 AAAATGAAAAAACAAAATAAAATG
*
12597 AAAAGGAAAAAA
1 AAAATGAAAAAA
12609 AAGTAATATC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 4 0.14
23 15 0.52
24 10 0.34
ACGTcount: A:0.74, C:0.03, G:0.10, T:0.12
Consensus pattern (24 bp):
AAAATGAAAAAACAAAATAAAATG
Found at i:13837 original size:20 final size:21
Alignment explanation
Indices: 13812--13856 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
13802 GAAAGAAAGA
*
13812 AAAAAAAGTATAAATAA-AAT
1 AAAAAAAGTAAAAATAATAAT
*
13832 AAAAAAGGTAAAAATAATAAT
1 AAAAAAAGTAAAAATAATAAT
13853 AAAA
1 AAAA
13857 CATTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.18
Consensus pattern (21 bp):
AAAAAAAGTAAAAATAATAAT
Found at i:14078 original size:36 final size:36
Alignment explanation
Indices: 13903--14244 Score: 365
Period size: 34 Copynumber: 9.3 Consensus size: 36
13893 ATTTCAAAAC
13903 TATA-TATATATATTTTCAAAAATTGTTTTAAAAACT-
1 TATATTATATATATTTTC-AAAA-TGTTTTAAAAACTA
* ** *
13939 TATATATATACATATTTTTCAAAAACATTTTAAAAATTA
1 TATAT-TATATATA-TTTTC-AAAATGTTTTAAAAACTA
* * *
13978 TATAAAATATATATGTTTTTAAAATGTTTT-AAAACTA
1 TAT--ATTATATATATTTTCAAAATGTTTTAAAAACTA
*
14015 TATAATATATATATGTTTTTCAAAATGTTTTAAAAACTA
1 TAT-AT-TATATAT-ATTTTCAAAATGTTTTAAAAACTA
14054 TATATTATATATATTTTCAAAATGTTTTAAAAAC--
1 TATATTATATATATTTTCAAAATGTTTTAAAAACTA
* *
14088 TATATTACACATATTTTCAAAATGTTTTAAAAAC--
1 TATATTATATATATTTTCAAAATGTTTTAAAAACTA
* *
14122 TATATTACACATATTTTCAAAATGTTTTAAAAACTA
1 TATATTATATATATTTTCAAAATGTTTTAAAAACTA
14158 TATATATATATATATTTTTTCAAAAATGTTTTAAAAACTA
1 TATAT-TATATATA--TTTTC-AAAATGTTTTAAAAACTA
* * *
14198 TATATCATATATATTTTCAAAATGTTTTCAAAATTA
1 TATATTATATATATTTTCAAAATGTTTTAAAAACTA
*
14234 TATAATATATA
1 TATATTATATA
14245 CATATATATA
Statistics
Matches: 267, Mismatches: 24, Indels: 30
0.83 0.07 0.09
Matches are distributed among these distances:
34 66 0.25
36 57 0.21
37 34 0.13
38 41 0.15
39 39 0.15
40 29 0.11
41 1 0.00
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (36 bp):
TATATTATATATATTTTCAAAATGTTTTAAAAACTA
Found at i:14086 original size:11 final size:11
Alignment explanation
Indices: 14031--14154 Score: 59
Period size: 11 Copynumber: 10.8 Consensus size: 11
14021 ATATATATGT
* *
14031 TTTTCAAAATG
1 TTTTAAAAATA
14042 TTTTAAAAACTA
1 TTTTAAAAA-TA
* *
14054 TATATTATATATA
1 T-T-TTAAAAATA
* *
14067 TTTTCAAAATG
1 TTTTAAAAATA
14078 TTTTAAAAACTA
1 TTTTAAAAA-TA
* * *
14090 TATTACACATA
1 TTTTAAAAATA
* *
14101 TTTTCAAAATG
1 TTTTAAAAATA
14112 TTTTAAAAACTA
1 TTTTAAAAA-TA
* * *
14124 TATTACACATA
1 TTTTAAAAATA
* *
14135 TTTTCAAAATG
1 TTTTAAAAATA
14146 TTTTAAAAA
1 TTTTAAAAA
14155 CTATATATAT
Statistics
Matches: 79, Mismatches: 29, Indels: 10
0.67 0.25 0.08
Matches are distributed among these distances:
11 53 0.67
12 17 0.22
13 4 0.05
14 5 0.06
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (11 bp):
TTTTAAAAATA
Found at i:14389 original size:15 final size:16
Alignment explanation
Indices: 14366--14403 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
14356 TAAAATATCA
*
14366 TAATAAAAATAA-TAT
1 TAATTAAAATAATTAT
14381 TAATTAAAATAATTAT
1 TAATTAAAATAATTAT
*
14397 TTATTAA
1 TAATTAA
14404 TCTAAAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATTAAAATAATTAT
Found at i:14409 original size:21 final size:20
Alignment explanation
Indices: 14378--14417 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
14368 ATAAAAATAA
14378 TATTAATTAAAATAATTATT
1 TATTAATTAAAATAATTATT
*
14398 TATTAATCTAAAATGATTAT
1 TATTAAT-TAAAATAATTAT
14418 AACATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
TATTAATTAAAATAATTATT
Found at i:14614 original size:20 final size:21
Alignment explanation
Indices: 14571--14614 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
14561 TTGATTTTTA
* *
14571 TTTTTATTTTAATCATTAATT
1 TTTTTATTTTAATCACTAAAT
14592 TTTTTA-TTTAATCACTAAAT
1 TTTTTATTTTAATCACTAAAT
14612 TTT
1 TTT
14615 AAATTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTTATTTTAATCACTAAAT
Found at i:15103 original size:13 final size:13
Alignment explanation
Indices: 15085--15109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15075 AAATATTTCA
15085 GATTAAATTAAAT
1 GATTAAATTAAAT
15098 GATTAAATTAAA
1 GATTAAATTAAA
15110 AAGTTAAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (13 bp):
GATTAAATTAAAT
Found at i:15434 original size:18 final size:19
Alignment explanation
Indices: 15385--15424 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
15375 ATTTAAAAAT
15385 AATTTTACAGTTTTTAACATA
1 AATTTT-CA-TTTTTAACATA
15406 AATTTTCATTTTTAA-ATA
1 AATTTTCATTTTTAACATA
15424 A
1 A
15425 TTTCTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 2 0.11
21 6 0.32
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (19 bp):
AATTTTCATTTTTAACATA
Found at i:15564 original size:25 final size:26
Alignment explanation
Indices: 15502--15564 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 26
15492 AATTTAATGA
15502 ATAACTATTTAAATAATTTAAATGAATAT
1 ATAACT-TTTAAATAA--TAAATGAATAT
* **
15531 GTATTTTTTAAATAA-AAATGAATAT
1 ATAACTTTTAAATAATAAATGAATAT
15556 ATAACTTTT
1 ATAACTTTT
15565 TGTAAATATC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
25 16 0.57
28 9 0.32
29 3 0.11
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (26 bp):
ATAACTTTTAAATAATAAATGAATAT
Found at i:20208 original size:59 final size:59
Alignment explanation
Indices: 20043--20209 Score: 201
Period size: 60 Copynumber: 2.8 Consensus size: 59
20033 TATTAGAATG
* *
20043 TTAAAAGTTTGAGGACTAATTTAAAATGAGGATCATAGTTTGAGGATGAAATTAAAATGT
1 TTAAAAG-TTGAGGACCAATTTAAAATGAGGATCATAGTTTGAGGATGAAATTAAAATAT
* * * * * * *
20103 TCAAAATTTTAGGGACCGATTTAAATTGA-AATTCATAGTTTAAGGATGAAATTAAAATAT
1 TTAAAAGTTGA-GGACCAATTTAAAATGAGGA-TCATAGTTTGAGGATGAAATTAAAATAT
* *
20163 TTAAAAGTCGAGGACCAATTTAAAATGAGGATCATAATTTGAGGATG
1 TTAAAAGTTGAGGACCAATTTAAAATGAGGATCATAGTTTGAGGATG
20210 TGTAATGCAA
Statistics
Matches: 86, Mismatches: 18, Indels: 7
0.77 0.16 0.06
Matches are distributed among these distances:
59 33 0.38
60 53 0.62
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (59 bp):
TTAAAAGTTGAGGACCAATTTAAAATGAGGATCATAGTTTGAGGATGAAATTAAAATAT
Found at i:22127 original size:18 final size:18
Alignment explanation
Indices: 22096--22134 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22086 TATTGAGGTC
*
22096 TTAAATAAATTTTTA-AT
1 TTAAATAAAATTTTATAT
22113 TTAACATAAAATTTTATAT
1 TTAA-ATAAAATTTTATAT
22132 TTA
1 TTA
22135 TTTTAGTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 10 0.53
19 5 0.26
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAAATAAAATTTTATAT
Found at i:22411 original size:12 final size:12
Alignment explanation
Indices: 22394--22422 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
22384 TAATAAAAAA
22394 TATATCATATTT
1 TATATCATATTT
22406 TATATCATATTT
1 TATATCATATTT
22418 TATAT
1 TATAT
22423 AATTTATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
TATATCATATTT
Found at i:22988 original size:63 final size:61
Alignment explanation
Indices: 22921--23048 Score: 170
Period size: 63 Copynumber: 2.1 Consensus size: 61
22911 ATTAAGAAAA
22921 AATAAAATTTTTGTTAA-AGCTTTCAAACCATAAA-ACAATTTATAAATAAAAACAAAAAATAAT
1 AATAAAATTTTTGTTAAGA-CTTTCAAACCATAAATA-AA-TTATAAATAAAAAC-AAAAATAAT
** * *
22984 AATAATGTTTTTGTTAAGATTTTCAAACCGTAAATAAATTATAAATAAAAACAAAAATAAT
1 AATAAAATTTTTGTTAAGACTTTCAAACCATAAATAAATTATAAATAAAAACAAAAATAAT
23045 AATA
1 AATA
23049 TTTACTATCG
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
61 13 0.22
62 14 0.24
63 30 0.51
64 2 0.03
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.32
Consensus pattern (61 bp):
AATAAAATTTTTGTTAAGACTTTCAAACCATAAATAAATTATAAATAAAAACAAAAATAAT
Found at i:23780 original size:14 final size:14
Alignment explanation
Indices: 23761--23787 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23751 TCTGTGAGAG
23761 ATCCAACGGTCCAT
1 ATCCAACGGTCCAT
23775 ATCCAACGGTCCA
1 ATCCAACGGTCCA
23788 GAGAAAACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.37, G:0.15, T:0.19
Consensus pattern (14 bp):
ATCCAACGGTCCAT
Found at i:25332 original size:17 final size:16
Alignment explanation
Indices: 25302--25344 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
25292 AACGCATATC
25302 AAATT-TTTTATCTTTTA
1 AAATTATTTTATC--TTA
25319 AAATTATTTT-TCTTA
1 AAATTATTTTATCTTA
25334 AAATTATTTTA
1 AAATTATTTTA
25345 AAAGATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.54
17 7 0.29
18 4 0.17
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (16 bp):
AAATTATTTTATCTTA
Found at i:25728 original size:21 final size:19
Alignment explanation
Indices: 25690--25728 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
25680 TAATTTTTAA
*
25690 ATTTTAAATTTTAAATAAG
1 ATTTTAAATTTAAAATAAG
25709 ATTTATAAACTTTAAAATAA
1 ATTT-TAAA-TTTAAAATAA
25729 ATAAACCTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (19 bp):
ATTTTAAATTTAAAATAAG
Found at i:27569 original size:5 final size:5
Alignment explanation
Indices: 27559--27596 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
27549 TAGCTTAATT
* *
27559 TTTTA TTTTA TTTTA TTTTA GTTTA -ATTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
27597 TATAATGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
4 3 0.10
5 26 0.90
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:27572 original size:24 final size:25
Alignment explanation
Indices: 27545--27598 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 25
27535 TTTCTTTCCT
*
27545 TTTTTAGCTTAATTT-TTTATTTTA
1 TTTTTAGCTTAATTTAATTATTTTA
** *
27569 -TTTTATTTTAGTTTAATTATTTTA
1 TTTTTAGCTTAATTTAATTATTTTA
27593 TTTTTA
1 TTTTTA
27599 TAATGTAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
23 11 0.46
24 8 0.33
25 5 0.21
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTTTAGCTTAATTTAATTATTTTA
Found at i:28047 original size:21 final size:21
Alignment explanation
Indices: 28021--28060 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
28011 TGTTGGACCG
28021 GGTCTTACAAGGTCAAGAAAA
1 GGTCTTACAAGGTCAAGAAAA
28042 GGTCTTACAAGGTCAAGAA
1 GGTCTTACAAGGTCAAGAA
28061 GATCGAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (21 bp):
GGTCTTACAAGGTCAAGAAAA
Found at i:31596 original size:15 final size:15
Alignment explanation
Indices: 31576--31605 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
31566 TTATCGAAAC
31576 TAAAATATTATAAAT
1 TAAAATATTATAAAT
*
31591 TAAAATATTTTAAAT
1 TAAAATATTATAAAT
31606 AATAGAGGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAAATATTATAAAT
Found at i:34385 original size:17 final size:17
Alignment explanation
Indices: 34365--34403 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
34355 ATTTCAAAGT
34365 TATAATTATATAA-AAAA
1 TATAATTATA-AATAAAA
*
34382 TATATTTATAAATAAAA
1 TATAATTATAAATAAAA
34399 TATAA
1 TATAA
34404 ATAAAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TATAATTATAAATAAAA
Found at i:34402 original size:11 final size:11
Alignment explanation
Indices: 34388--34412 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
34378 AAAATATATT
34388 TATAAATAAAA
1 TATAAATAAAA
34399 TATAAATAAAA
1 TATAAATAAAA
34410 TAT
1 TAT
34413 TTATTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TATAAATAAAA
Found at i:34718 original size:136 final size:141
Alignment explanation
Indices: 34402--34771 Score: 445
Period size: 136 Copynumber: 2.6 Consensus size: 141
34392 AATAAAATAT
* * * * * * *
34402 AAATAAAATATTTATTTATTTAGAAATATCAGAAAAT-GACTTCTAGGTGCCTTAAGACAGCTCT
1 AAATAAGATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGTTGCTTTAAGACTGCTC-
* *
34466 TTTCTTTGATATTAAAAAATAAATAAATAATTAAAACATTTTTCTAAAAATAATAATAATAGATT
65 TTTC-TTAATATTAAAAAATAAATAAATAAATAAAACA--TTTCTAAAAATAATAATAATAGATT
34531 AATATATAATTTTAA
127 AATATATAATTTTAA
* * *
34546 ATATAGGATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGTTGTTTTAAGACTG-TCA
1 AAATAAGATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGTTGCTTTAAGACTGCTC-
*
34610 TTTCTTAATATTAAAAAATAAATAAATATTAATAAAACA-TT-T-AAAAT-AT-AT-ATATA-T-
65 TTTCTTAATATTAAAAAATAAATAAATA--AATAAAACATTTCTAAAAATAATAATAATAGATTA
34667 ATATATAATTTATAA
128 ATATATAATTT-TAA
* * *
34682 AAATAAGATGTTTATTTAATTAAAAATATCAGAAAATGGACATCCGGTTGCTTTAAGACTGCTCT
1 AAATAAGATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGTTGCTTTAAGACTGCTCT
*
34747 TTCTTAATATTTAAAAATAAATAAA
66 TTCTTAATATTAAAAAATAAATAAA
34772 CATTGTTATC
Statistics
Matches: 200, Mismatches: 21, Indels: 18
0.84 0.09 0.08
Matches are distributed among these distances:
135 11 0.05
136 84 0.42
137 6 0.03
138 2 0.01
139 2 0.01
140 5 0.03
141 1 0.00
142 2 0.01
143 23 0.12
144 39 0.19
145 25 0.12
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (141 bp):
AAATAAGATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGTTGCTTTAAGACTGCTCT
TTCTTAATATTAAAAAATAAATAAATAAATAAAACATTTCTAAAAATAATAATAATAGATTAATA
TATAATTTTAA
Found at i:36083 original size:2 final size:2
Alignment explanation
Indices: 36076--36104 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
36066 TTGTTTAATA
36076 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36105 TAATAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36113 original size:3 final size:3
Alignment explanation
Indices: 36071--36138 Score: 57
Period size: 3 Copynumber: 21.3 Consensus size: 3
36061 ATATTTTGTT
*
36071 TAA TAA T-A TATA TATA TATA TATA TATA TAA TAT TAA TAA TAA TAA
1 TAA TAA TAA TA-A TA-A TA-A TA-A TA-A TAA TAA TAA TAA TAA TAA
* *
36117 TAT TTA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
36139 TAACTGAAGA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
2 2 0.04
3 36 0.63
4 19 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (3 bp):
TAA
Found at i:36128 original size:18 final size:17
Alignment explanation
Indices: 36071--36136 Score: 64
Period size: 18 Copynumber: 3.6 Consensus size: 17
36061 ATATTTTGTT
36071 TAATAATATATATATATATA
1 TAATAATA-ATAT-TATA-A
36091 TATATATATAATA-T-TAA
1 TA-ATA-ATAATATTATAA
36108 TAATAATAATATTTATAA
1 TAATAATAATA-TTATAA
36126 TAATAATAATA
1 TAATAATAATA
36137 ATTAACTGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
15 6 0.15
16 3 0.07
17 4 0.10
18 16 0.39
19 1 0.02
20 2 0.05
21 6 0.15
22 3 0.07
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATAATAATATTATAA
Found at i:37165 original size:76 final size:76
Alignment explanation
Indices: 36267--37138 Score: 1501
Period size: 76 Copynumber: 11.5 Consensus size: 76
36257 GATGGAAATG
* * * * *
36267 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCTAAGGTTTTGAAAATATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
36332 CCCGAAGGCTT
66 CCCGAAGGCTT
* * * *
36343 TTTGAAAACATCATGCACTGTAAGACTTACAGATGACCCTAAGGTTTTGAAAATATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
36408 CCCGAAGGCTT
66 CCCGAAGGCTT
36419 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
36484 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
36495 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACGTCAAAAAACT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
36560 CCCGAAGGCTT
66 CCCGAAGGCTT
*
36571 TTTGGAAAAATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
36636 CCTGAAGGCTT
66 CCCGAAGGCTT
*
36647 TTTGGAAACATCATGCACTGTAGGACTTACATATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
36712 CCCGAAGACTT
66 CCCGAAGGCTT
*
36723 TTTGGAAACATCATGCACTGTAGGACTTGCAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
36788 CCCGAAGACTT
66 CCCGAAGGCTT
*
36799 TTTGGAAACATCATGCACTGTAGGACTTGCAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
36864 CCCGAAGGTTTT
66 CCCGAAGG-CTT
* * *
36876 TTTGGAAACATCATGTACTGTAGGAGTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
36941 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
36952 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTTAAAACATAAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
37017 CCCAAAGGCTT
66 CCCGAAGGCTT
*
37028 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATTAAAAAGCT
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
37093 CCCGAAGGCTT
66 CCCGAAGGCTT
37104 TTTGGAAACATCATGCACTGTAGGACTTACAGATG
1 TTTGGAAACATCATGCACTGTAGGACTTACAGATG
37139 TGGGAAATAG
Statistics
Matches: 760, Mismatches: 35, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
76 689 0.91
77 71 0.09
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (76 bp):
TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
CCCGAAGGCTT
Found at i:37826 original size:22 final size:22
Alignment explanation
Indices: 37801--37880 Score: 85
Period size: 22 Copynumber: 3.6 Consensus size: 22
37791 AATAAAGCTT
37801 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
37823 TCATCTTT--AAAGAGATAGGCTA
1 TCATCTTTGAAAAGAGA-A-TCTA
*
37845 TCATCTTTGAAGAA-AGAGTCTA
1 TCATCTTTGAA-AAGAGAATCTA
*
37867 TTATCTTTGAAAAG
1 TCATCTTTGAAAAG
37881 TGTAGATGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
20 7 0.15
21 3 0.06
22 32 0.67
24 4 0.08
25 2 0.04
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:42688 original size:8 final size:7
Alignment explanation
Indices: 42674--42743 Score: 51
Period size: 7 Copynumber: 10.4 Consensus size: 7
42664 CAAATTTCCT
42674 TTTTTTC
1 TTTTTTC
42681 TATTTTTC
1 T-TTTTTC
42689 -TTTTTC
1 TTTTTTC
42695 TTTTTT-
1 TTTTTTC
42701 TTGTTTT-
1 TT-TTTTC
*
42708 GTTTTT-
1 TTTTTTC
*
42714 TTTTGT-
1 TTTTTTC
42720 TTTTTTC
1 TTTTTTC
42727 TTTTTTC
1 TTTTTTC
* *
42734 ATTCTTC
1 TTTTTTC
42741 TTT
1 TTT
42744 CTTTGCTGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
6 21 0.40
7 25 0.48
8 6 0.12
ACGTcount: A:0.03, C:0.10, G:0.04, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:43049 original size:2 final size:2
Alignment explanation
Indices: 43042--43076 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
43032 ACAACAAAGG
43042 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
43077 ATTAAATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:48181 original size:17 final size:17
Alignment explanation
Indices: 48161--48199 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
48151 ATTTCACAGT
48161 TATAATTATATAAAAAA
1 TATAATTATATAAAAAA
* *
48178 TATATTTATATATAAAA
1 TATAATTATATAAAAAA
48195 TATAA
1 TATAA
48200 ATAAATATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TATAATTATATAAAAAA
Done.