genome.fa.s2204.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002204.1 Hibiscus syriacus cultivar Beakdansim tig00004492_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64879

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828--874	19	2.5	19	83	10	53	53	4	12	29	1.58
12228--12276	15	3.3	15	94	0	80	8	63	18	10	1.50
13341--13383	22	2.0	22	82	8	54	51	20	0	27	1.48
13646--13697	21	2.5	21	81	3	61	38	19	25	17	1.93
13686--13799	20	5.7	20	81	6	104	31	24	18	25	1.97
13683--13799	61	1.9	62	84	3	157	33	23	17	24	1.97
14377--14427	19	2.7	19	96	0	93	11	21	21	45	1.84
14399--14473	33	2.3	33	80	0	96	10	21	25	42	1.85
14476--14538	22	3.0	21	79	9	74	12	25	17	44	1.84
16592--16658	21	3.2	21	66	6	55	23	35	20	19	1.95
16540--16658	42	2.8	42	81	5	107	22	36	18	22	1.95
18041--18091	20	2.6	19	87	6	75	49	17	21	11	1.79
18096--18180	19	4.7	19	69	15	63	14	23	21	41	1.89
21735--21792	20	2.9	20	97	0	107	37	24	22	15	1.93
21816--21869	14	3.5	14	77	22	63	11	20	20	48	1.80
21798--21868	33	2.2	33	84	0	88	19	19	21	39	1.93
21811--21877	33	2.0	33	91	0	107	13	22	19	44	1.85
21965--22001	14	2.6	14	86	0	56	48	21	0	29	1.50
23886--23941	14	3.7	14	78	17	67	46	26	17	8	1.78
23863--23945	32	2.5	33	92	3	132	48	24	18	9	1.77
23952--24046	19	5.6	17	70	24	69	11	20	23	45	1.83
23974--24030	14	3.9	14	77	18	62	8	17	26	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23957--24046	32	2.8	33	93	5	157	11	18	23	46	1.81
24031--24085	20	2.8	19	83	8	65	16	23	23	36	1.94
24563--24607	18	2.5	18	88	0	72	13	15	44	26	1.83
25916--25953	20	1.9	20	88	0	58	50	21	15	13	1.78
26210--26258	22	2.3	21	80	16	57	22	14	40	22	1.90
26217--26260	22	2.0	22	91	8	72	18	15	43	22	1.88
26440--26553	20	5.7	20	82	6	122	24	18	26	30	1.98
26420--26555	41	3.3	41	79	6	159	24	17	25	33	1.97
26543--26635	20	4.5	21	75	4	91	18	24	17	39	1.91
26482--26616	41	3.3	41	81	4	130	20	21	20	37	1.94
26543--26631	41	2.2	41	97	0	169	17	24	15	41	1.89
31728--31758	16	1.9	16	93	0	53	32	12	12	41	1.81
41533--41579	3	15.7	3	86	0	67	27	0	6	65	1.16
46270--46597	164	2.0	164	100	0	656	34	20	17	27	1.95
50271--50328	26	2.2	27	78	12	66	36	0	20	43	1.52
50293--50339	23	1.9	25	83	12	62	34	2	19	44	1.62
51030--51085	27	2.1	28	83	6	71	51	7	0	41	1.29
52702--52800	21	4.8	21	86	2	146	40	18	26	15	1.89
52687--52800	41	2.8	41	90	1	174	40	18	25	15	1.90
52786--52863	41	1.9	41	89	0	120	38	23	15	23	1.92
52789--52882	20	4.7	20	80	7	91	32	25	17	24	1.96
52687--52838	62	2.5	62	82	5	193	40	19	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53067--53110	22	2.0	22	95	0	79	20	45	15	18	1.85
53374--53411	20	1.9	20	88	0	58	13	15	21	50	1.78
54731--54773	18	2.4	18	84	0	59	25	46	13	13	1.81
55301--55358	14	3.9	14	75	16	62	50	24	17	8	1.74
55285--55375	32	2.8	33	93	3	157	48	21	18	10	1.79
55247--55380	19	7.6	19	70	18	83	43	23	20	12	1.86
55392--55449	14	3.9	14	79	16	71	8	17	25	48	1.75
55387--55465	32	2.4	33	95	2	142	10	18	24	46	1.80
55406--55523	20	6.4	19	77	11	95	13	20	24	41	1.88
57489--57591	19	5.7	19	80	13	110	46	19	22	11	1.82
57542--57598	14	3.8	14	71	24	53	49	21	21	8	1.76
57491--57603	32	3.3	33	86	8	138	45	20	23	11	1.83
57622--57678	20	2.8	20	89	0	87	15	22	22	38	1.92
58736--58789	24	2.2	24	90	0	81	24	16	20	38	1.92
58964--58988	12	2.1	12	100	0	50	72	0	28	0	0.86
61274--61400	33	3.8	33	86	4	193	42	18	22	15	1.89
61275--61407	66	2.0	66	95	0	239	41	18	22	17	1.90
61400--61442	20	2.2	20	87	4	61	16	18	23	41	1.89
61428--61461	14	2.4	14	85	0	50	8	23	20	47	1.78
61583--61619	14	2.6	14	91	0	65	45	24	0	29	1.53
62970--63036	21	3.2	21	68	4	55	19	20	35	23	1.95
62970--63092	42	2.9	41	80	7	113	22	17	36	22	1.95

Tables:   1

The End!