Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002205.1 Hibiscus syriacus cultivar Beakdansim tig00004495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106020

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1289--1367
40
2.0
41
82
7
99
27
20
35
16
1.94
3477--3523
19
2.5
19
80
10
60
48
21
14
14
1.80
4092--4153
20
3.1
20
90
0
97
22
16
20
40
1.91
7694--7725
15
2.1
15
94
0
55
71
3
0
25
1.00
13531--13938
203
2.0
203
98
0
789
30
12
17
38
1.88
18685--18735
23
2.2
23
85
0
66
43
23
15
17
1.88
19730--19779
26
1.9
26
95
0
91
46
14
8
32
1.73
27933--28009
37
2.1
37
87
0
109
24
25
12
36
1.92
28739--28776
14
2.7
14
100
0
76
15
26
7
50
1.72
30846--30914
23
3.0
23
78
0
84
30
23
26
20
1.98
42688--42733
17
2.7
17
83
12
67
4
19
2
73
1.10
42707--42749
21
2.0
21
91
8
70
6
18
4
69
1.29
42761--42805
15
2.9
16
90
3
74
0
17
6
75
1.01
43890--43925
6
5.8
6
96
3
63
33
30
16
19
1.94
66462--66493
15
2.1
15
94
0
55
53
9
25
12
1.68
67897--67934
14
2.7
14
95
0
67
21
18
13
47
1.82
73583--73969
183
2.1
184
92
3
640
43
2
8
45
1.48
74111--74155
18
2.5
18
82
13
65
35
15
17
31
1.92
74950--75005
26
2.1
28
86
6
80
50
3
8
37
1.51
76499--76545
24
2.0
23
92
8
78
23
4
0
72
1.02
81699--81731
2
17.0
2
87
6
50
45
3
0
51
1.16
81720--82078
38
9.6
36
74
17
159
44
3
6
45
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81718--81969
36
6.6
36
76
12
141
45
4
5
44
1.49
81719--81984
79
3.5
73
78
11
257
45
4
6
43
1.50
81757--81991
79
3.1
76
82
11
282
46
4
4
44
1.43
81758--82079
38
8.6
38
77
10
247
44
3
5
45
1.44
82089--82129
10
4.3
10
87
12
68
19
0
0
80
0.71
82086--82128
18
2.4
18
96
3
79
16
0
0
83
0.64
83210--83279
25
2.7
26
73
8
72
25
5
4
64
1.34
84109--84161
2
26.5
2
100
0
106
50
0
0
49
1.00
85458--85484
13
2.1
13
100
0
54
37
14
25
22
1.93
85495--85529
4
8.8
4
100
0
70
25
0
0
74
0.82
86619--86648
3
10.0
3
92
0
51
63
0
3
33
1.11
86997--87035
21
1.9
20
89
5
60
61
5
0
33
1.18
87912--87961
20
2.5
20
90
0
73
30
8
16
46
1.75
91905--91992
25
3.3
25
71
17
77
36
29
11
22
1.89
91870--92034
31
5.5
31
76
11
153
38
30
9
20
1.85
91902--92010
56
1.9
57
88
3
166
37
29
11
22
1.88
91970--92034
33
2.0
33
84
6
87
40
30
9
20
1.83
101058--101102
12
3.7
12
82
5
54
26
4
0
68
1.08
101331--101397
29
2.3
29
92
0
107
41
1
4
52
1.31

Tables:   1

The End!