genome.fa.s2206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002206.1 Hibiscus syriacus cultivar Beakdansim tig00004497_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112810

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335--385	3	17.0	3	77	22	54	33	0	0	66	0.92
333--385	13	4.0	13	73	22	56	32	0	0	67	0.91
13589--13925	114	3.0	114	95	0	593	33	15	20	30	1.93
14619--15301	112	6.0	112	84	5	734	38	13	17	30	1.89
15085--15420	123	2.8	123	90	2	520	39	15	16	27	1.89
15346--15405	17	3.4	17	70	17	50	48	8	26	16	1.75
15820--15848	14	2.1	14	100	0	58	31	41	20	6	1.79
16504--16530	9	3.0	9	100	0	54	55	0	33	11	1.35
20121--20320	18	11.1	18	67	21	107	41	6	7	45	1.57
20132--20344	33	6.5	33	75	17	212	42	6	7	44	1.57
20092--20214	25	4.8	25	73	14	83	41	5	5	47	1.51
20133--20247	58	2.0	58	98	0	221	42	7	6	43	1.58
20206--20263	17	3.5	17	69	21	59	46	6	5	41	1.53
20437--20569	33	4.3	33	76	14	140	43	6	10	39	1.66
20421--20549	59	2.2	59	86	5	172	44	5	10	39	1.61
20470--20512	22	2.0	22	86	9	61	48	6	6	37	1.57
20547--20661	18	5.9	18	72	18	88	42	6	9	41	1.62
20522--20664	80	1.8	75	86	7	205	42	5	9	42	1.60
20687--20771	33	2.7	33	87	5	113	48	3	7	41	1.47
20722--20795	20	3.5	20	77	16	85	52	1	6	39	1.36
20722--20782	23	2.7	23	79	16	74	54	1	6	37	1.37
20735--20784	13	3.8	13	77	17	59	54	2	6	38	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20578--20806	103	2.3	99	79	13	229	44	4	7	42	1.54
20833--20897	20	3.1	21	76	14	71	50	6	1	41	1.36
20929--21031	20	5.1	20	69	12	75	41	5	6	45	1.55
20895--20976	11	7.8	10	70	22	53	47	2	2	47	1.28
20939--20976	11	3.5	11	88	0	58	44	2	2	50	1.30
21018--21102	27	3.2	28	80	9	81	41	3	7	48	1.47
21070--21167	2	49.0	2	81	11	112	50	2	2	45	1.24
21082--21167	36	2.4	36	94	0	145	50	2	2	45	1.27
20838--21167	39	8.2	42	67	22	174	45	4	4	45	1.44
21190--22001	209	3.8	210	90	4	1138	30	11	8	50	1.66
27116--27366	123	2.0	124	93	3	436	35	7	7	48	1.62
30478--30510	17	1.9	17	100	0	66	30	15	24	30	1.95
31297--31334	15	2.6	15	91	4	60	34	0	0	65	0.93
33876--33915	21	1.9	21	85	10	55	40	0	10	50	1.36
35025--35088	17	4.0	16	81	15	71	56	3	0	40	1.15
35034--35100	11	6.2	11	70	16	50	52	2	1	43	1.25
35026--35133	17	6.2	17	69	16	62	52	2	2	41	1.30
35130--35173	15	2.8	16	86	10	63	47	6	2	43	1.42
35256--35423	9	19.7	9	70	19	51	47	2	4	45	1.39
35270--35421	2	78.0	2	67	21	65	47	3	5	44	1.42
35212--35366	68	2.3	65	78	11	150	48	1	5	44	1.36
35020--35369	85	4.2	87	73	16	265	49	3	4	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35808--35860	7	7.6	7	82	0	70	43	35	1	18	1.62
35953--35987	18	1.9	18	88	11	54	40	5	14	40	1.69
36154--36402	14	17.4	14	67	26	73	44	3	2	48	1.33
36154--36334	29	6.0	29	74	17	90	43	4	3	49	1.39
36168--36255	43	2.0	44	86	6	126	43	5	2	48	1.39
36280--36412	6	21.2	6	71	19	53	47	1	2	48	1.23
36348--36403	27	2.0	30	89	10	91	51	0	0	48	1.00
36313--36419	41	2.6	41	79	13	112	51	0	0	46	1.13
40595--40671	29	2.7	29	85	0	100	40	27	11	20	1.87
47691--47722	10	2.8	12	86	13	50	28	18	28	25	1.98
47869--47899	13	2.4	13	94	0	53	12	19	48	19	1.81
53614--53674	20	2.9	21	87	7	79	18	26	34	21	1.96
62349--62393	22	2.1	22	95	4	83	17	24	33	24	1.96
66833--66874	22	1.9	22	90	9	68	11	33	33	21	1.90
67733--67767	2	17.0	2	88	5	52	48	2	2	45	1.32
69714--69760	14	3.7	14	71	26	50	51	4	0	44	1.21
69712--69761	23	2.1	24	96	3	93	48	4	0	48	1.20
73364--73489	63	2.0	63	96	0	234	42	15	13	28	1.84
76137--76182	24	2.0	23	91	4	74	39	2	0	58	1.10
79839--79918	24	3.3	24	68	16	74	28	6	25	40	1.80
79826--79922	49	2.0	49	95	2	178	28	8	24	38	1.84
80606--80682	37	2.1	37	85	4	102	48	1	3	46	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80828--80865	20	1.9	20	88	0	58	21	26	10	42	1.85
80938--80964	14	1.9	14	100	0	54	51	0	3	44	1.19
82897--82921	13	1.9	13	100	0	50	24	0	0	76	0.80
83334--83361	6	4.7	6	100	0	56	82	0	0	17	0.68
88762--88816	25	2.2	25	83	6	67	43	1	3	50	1.30
91415--91622	31	6.8	31	92	3	271	38	14	11	35	1.81
96658--96804	31	4.8	30	88	4	197	37	14	12	36	1.83
99680--99739	31	1.9	31	100	0	120	33	26	15	25	1.95

Tables:   1

The End!