genome.fa.s2207.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002207.1 Hibiscus syriacus cultivar Beakdansim tig00004498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90338

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1220--1366	31	4.8	30	85	5	188	36	14	12	36	1.84
4144--4204	31	2.0	31	100	0	122	32	29	14	22	1.94
4479--4508	14	2.1	14	100	0	60	6	40	0	53	1.27
7216--7434	115	1.9	115	85	5	300	33	12	13	40	1.82
18194--18250	21	2.7	21	76	17	55	54	1	1	42	1.21
18201--18237	19	2.1	19	85	10	51	59	0	2	37	1.12
19251--19295	19	2.3	19	81	11	56	2	6	33	57	1.37
19813--19876	3	22.0	3	85	6	78	62	0	1	35	1.05
20231--20527	112	2.6	114	86	4	426	27	20	13	39	1.89
21357--21404	22	2.2	22	96	0	87	37	14	12	35	1.84
26044--26095	1	52.0	1	80	0	50	0	11	0	88	0.52
26036--26094	9	6.7	9	84	3	75	0	13	0	86	0.57
26036--26094	18	3.3	18	88	2	84	0	13	0	86	0.57
26036--26096	27	2.3	27	91	0	104	0	14	0	85	0.60
29036--29118	43	1.9	43	87	0	121	34	22	12	30	1.91
30511--30563	24	2.2	23	78	15	54	64	1	3	30	1.22
30532--30585	28	2.0	27	88	3	81	59	0	5	35	1.21
30537--30596	28	2.1	28	84	0	75	60	0	5	35	1.19
32855--32906	3	18.0	3	84	7	54	61	0	0	38	0.96
37482--37544	17	3.6	17	76	18	58	36	4	3	55	1.37
46921--46965	21	2.1	21	87	0	63	31	28	24	15	1.96
47632--47727	32	3.0	32	79	14	126	29	17	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47719--47901	30	6.1	30	97	0	332	21	22	25	30	1.99
52315--52393	17	4.0	21	71	23	64	63	2	0	34	1.08
52315--52366	9	6.1	9	76	13	56	63	1	0	34	1.06
52312--52364	16	3.2	17	84	10	65	66	1	0	32	1.03
52318--52367	17	3.0	17	91	2	75	60	4	0	36	1.16
52420--52448	10	2.9	10	100	0	58	41	0	37	20	1.53
53957--53992	2	18.0	2	100	0	72	50	0	0	50	1.00
55117--55225	24	4.5	24	98	0	209	29	22	13	33	1.93
59054--59086	16	2.1	16	88	11	50	57	9	9	24	1.58
65830--65894	31	2.1	31	82	5	78	38	3	10	47	1.54
68012--68048	19	1.9	19	88	0	56	35	21	16	27	1.94
70365--70432	22	3.3	22	66	19	65	32	11	5	50	1.63
70355--70436	39	2.1	39	93	0	137	30	9	7	52	1.61
73592--73639	17	2.8	17	76	20	55	56	6	10	27	1.57
76685--76721	18	2.1	18	89	0	56	40	13	2	43	1.58
79848--79886	18	2.2	18	86	9	53	61	0	15	23	1.33
79991--80058	33	2.1	31	84	10	84	44	5	5	44	1.52
80470--82632	106	20.4	106	97	0	3979	23	18	24	33	1.96
87800--87838	18	2.2	18	86	9	53	61	0	15	23	1.33
88047--88124	35	2.1	35	84	11	95	41	5	6	47	1.51
88068--88142	38	1.9	38	84	10	98	40	4	8	48	1.51
87937--88156	108	2.0	105	79	14	227	43	5	5	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88099--88179	41	1.9	43	80	9	96	41	7	6	44	1.57
89555--89592	14	2.8	14	84	4	51	57	26	13	2	1.49

Tables:   1

The End!