Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002208.1 Hibiscus syriacus cultivar Beakdansim tig00004500_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43457

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4236--4309
8
9.4
8
77
14
73
77
1
13
8
1.06
4231--4303
24
3.1
24
84
7
96
76
1
13
8
1.07
4251--4318
32
2.1
32
84
10
86
76
0
14
8
1.01
5193--5848
334
2.0
334
89
1
1001
37
16
20
25
1.93
5782--5846
20
3.3
20
67
18
55
44
12
21
21
1.85
5672--5964
117
2.6
114
87
8
390
39
14
21
24
1.91
9121--9229
55
2.0
55
98
0
209
37
8
7
46
1.62
16478--16518
20
2.0
22
90
9
68
51
21
0
26
1.48
16955--16996
16
2.6
16
92
0
66
33
30
14
21
1.93
26511--26615
37
2.8
37
85
0
138
42
14
13
29
1.83
26972--27014
18
2.5
17
85
7
61
25
4
2
67
1.22
26971--27086
60
1.9
60
86
10
166
31
3
1
62
1.21
26979--27100
60
2.0
60
84
6
158
30
4
1
63
1.22
27253--27307
22
2.6
21
83
13
60
12
3
5
78
1.06
27271--27327
30
1.9
30
85
7
80
15
3
1
78
0.96
31391--31927
183
2.9
183
95
0
968
27
20
21
30
1.98
33109--33225
36
3.1
36
70
4
99
27
18
15
38
1.91
33068--33238
72
2.3
75
84
7
208
26
18
13
41
1.87
33103--33263
72
2.2
72
81
9
177
26
16
16
40
1.90
33107--33263
73
2.2
71
80
10
167
26
17
16
39
1.90
33257--33398
39
3.3
39
67
23
106
26
21
14
38
1.91
33312--33633
108
3.1
105
89
4
474
30
19
12
37
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33533--33608
36
2.1
36
90
0
116
22
21
15
40
1.90
33808--34438
105
6.0
105
90
3
918
34
26
17
21
1.96
34981--35085
37
2.8
37
85
0
138
41
14
14
29
1.85
35442--35484
18
2.5
17
85
7
61
25
4
2
67
1.22
35702--35744
2
21.5
2
100
0
86
48
0
0
51
1.00
40423--40542
44
2.7
44
94
0
204
22
4
5
67
1.30
43099--43243
60
2.4
60
86
3
204
21
36
23
18
1.95

Tables:   1

The End!