genome.fa.s2209.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002209.1 Hibiscus syriacus cultivar Beakdansim tig00004501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69035

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3735--3773	3	13.3	3	94	5	71	64	0	0	35	0.94
3737--3771	17	2.1	17	100	0	70	65	0	0	34	0.93
3735--3773	20	2.0	20	100	0	78	64	0	0	35	0.94
5357--5424	35	1.9	35	90	0	109	27	8	26	36	1.86
5394--5510	47	2.5	48	84	4	148	27	11	23	36	1.90
8882--9005	64	2.0	63	93	4	198	30	18	21	29	1.97
11683--11728	23	2.0	23	91	0	74	21	19	28	30	1.98
19326--19377	19	2.7	19	90	0	86	17	21	30	30	1.96
20334--20360	2	13.5	2	100	0	54	51	48	0	0	1.00
20360--20385	2	13.0	2	100	0	52	50	0	0	50	1.00
20543--20607	31	2.1	31	97	0	121	33	24	21	20	1.97
21412--21465	20	2.4	23	82	11	69	25	22	18	33	1.97
21453--21614	64	2.5	63	81	6	173	24	25	19	31	1.98
24885--24955	31	2.3	30	81	9	81	33	25	19	21	1.97
24909--24974	31	2.1	31	94	0	114	34	24	19	21	1.96
25777--25814	20	1.9	20	100	0	76	23	23	21	31	1.98
25822--25983	64	2.5	64	82	6	184	25	25	17	31	1.97
25841--25983	65	2.2	64	82	6	173	25	23	18	32	1.97
28604--28653	21	2.4	21	96	0	91	36	18	20	26	1.95
31920--31980	31	2.0	31	83	6	79	34	1	6	57	1.34
31902--31979	31	2.7	27	70	22	68	38	2	5	53	1.37
33060--33295	131	1.8	131	81	0	301	43	16	11	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35343--35391	3	16.3	3	95	0	89	63	0	2	34	1.06
35390--35418	3	9.7	3	100	0	58	34	0	31	34	1.58
36995--37062	35	1.9	35	90	0	109	27	8	26	36	1.86
37032--37148	47	2.5	48	84	4	148	27	11	23	36	1.90
43259--43338	23	3.6	22	73	13	74	28	21	22	27	1.99
50891--50942	19	2.7	19	90	0	86	17	21	30	30	1.96
51007--51044	20	1.9	20	94	0	67	23	21	28	26	1.99
51899--51947	2	24.5	2	95	0	89	51	46	0	2	1.12
52102--52178	31	2.5	32	85	10	108	35	25	19	19	1.95
52114--52178	31	2.1	31	94	0	112	33	24	20	21	1.97
52983--53036	20	2.4	23	88	11	78	25	24	18	31	1.97
56314--56378	31	2.1	31	91	0	103	33	23	20	23	1.97
57180--57237	20	2.6	22	89	10	84	25	22	20	31	1.98
57228--57386	64	2.5	64	80	11	180	25	25	17	31	1.97
60007--60056	21	2.4	21	89	0	73	40	14	20	26	1.90
60726--60784	31	1.9	31	92	0	100	44	1	8	45	1.44
60808--61051	22	11.5	22	75	9	161	48	11	0	40	1.39
60808--61051	44	5.7	44	80	10	310	48	11	0	40	1.39
60808--61051	66	3.8	66	81	10	326	48	11	0	40	1.39
60868--60896	14	2.1	14	100	0	58	41	13	0	44	1.44
60880--61044	22	7.5	23	85	5	166	47	12	0	40	1.41
62594--63195	199	2.9	207	90	6	981	22	24	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64124--64190	29	2.3	29	84	5	82	71	1	20	5	1.15
64430--64454	2	12.5	2	100	0	50	48	0	0	52	1.00
65683--65763	42	1.9	42	84	0	108	34	18	18	28	1.95
66012--66068	29	2.0	28	86	10	80	47	3	0	49	1.18
66446--66585	40	3.5	39	85	10	176	32	15	20	32	1.93
66446--66725	41	6.9	41	80	6	239	32	15	19	32	1.93
66446--66662	81	2.7	79	86	5	267	33	15	19	32	1.93

Tables:   1

The End!