genome.fa.s221.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000221.1 Hibiscus syriacus cultivar Beakdansim tig00000391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71788

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8793--8829	20	1.9	19	89	10	58	24	18	5	51	1.67
13740--13789	21	2.3	22	86	3	66	44	2	0	54	1.11
13736--13789	22	2.5	22	81	9	74	44	1	0	53	1.11
14471--14527	28	2.0	28	96	0	105	21	40	7	31	1.80
17281--17428	76	2.0	75	87	4	217	29	2	9	58	1.43
17393--17563	64	2.7	64	97	1	317	32	0	13	54	1.39
17660--17689	12	2.5	12	94	0	51	6	30	0	63	1.20
18156--18198	18	2.4	18	92	0	68	20	6	0	72	1.08
18234--18283	16	2.9	17	85	8	57	28	0	2	70	0.99
26938--26966	14	2.0	15	93	6	51	13	6	3	75	1.13
28284--28326	21	2.0	21	86	0	59	37	18	16	27	1.92
35493--35620	20	6.4	20	99	0	238	32	21	25	21	1.97
35630--35671	20	2.1	20	90	0	66	50	23	9	16	1.75
36162--36203	20	2.1	20	90	0	66	14	16	19	50	1.79
36171--36214	20	2.2	20	83	0	52	15	18	18	47	1.83
38341--38459	42	2.8	42	89	0	157	21	36	19	22	1.95
38341--38459	21	5.7	21	83	5	116	21	36	19	22	1.95
39352--39442	45	2.0	46	91	2	148	26	18	26	28	1.98
39462--39500	20	2.0	20	89	0	60	20	15	33	30	1.94
41932--42089	21	7.8	20	72	7	86	38	25	17	18	1.92
42056--42249	20	9.6	20	79	5	203	35	25	18	20	1.95
42056--42249	60	3.2	60	80	3	228	35	25	18	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42629--42697	32	2.2	32	91	0	111	11	21	20	46	1.82
42629--42678	18	3.0	18	69	22	54	12	22	22	44	1.85
42779--42856	41	1.9	41	97	0	147	44	16	25	12	1.83
42780--42855	21	3.7	21	83	3	109	46	17	25	11	1.82
42840--42896	14	3.7	14	75	20	60	42	22	24	10	1.85
42835--42899	33	2.0	33	100	0	130	43	21	24	10	1.84
42838--42912	33	2.3	33	92	0	123	45	24	21	9	1.81
42908--43005	19	5.7	19	70	22	90	10	23	22	43	1.83
42930--43019	14	5.7	14	72	23	72	8	24	23	43	1.82
42913--43027	33	3.5	33	97	0	221	9	23	20	46	1.80
44722--45740	93	11.1	93	98	1	1948	21	12	19	46	1.83
45788--45916	19	7.3	19	75	17	125	46	28	16	8	1.76
45824--45916	33	2.8	32	91	4	150	47	27	17	7	1.74
45788--45916	52	2.5	52	72	14	131	46	28	16	8	1.76
45912--46032	19	6.6	19	80	10	135	11	19	23	45	1.83
47942--47977	14	2.6	14	95	0	63	33	0	22	44	1.53
48084--48128	19	2.4	19	100	0	90	46	17	20	15	1.84
48153--48304	33	4.5	33	72	21	152	13	23	17	46	1.83
48153--48460	52	5.9	52	87	7	457	13	22	17	46	1.84
48175--48460	19	16.4	19	77	18	320	13	22	17	46	1.83
48153--48474	71	4.8	67	79	14	278	13	22	17	45	1.84
48194--48474	33	8.2	33	77	14	302	13	22	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50746--50770	12	2.1	12	100	0	50	0	28	0	72	0.86
51671--51900	20	11.5	20	83	1	219	20	17	25	36	1.94
51887--51969	21	4.0	21	73	6	78	25	16	24	33	1.96
51867--51965	42	2.4	43	77	11	100	21	18	23	37	1.94
55913--56038	47	2.8	45	86	5	173	38	7	23	30	1.83
59442--59481	19	2.0	20	85	9	55	35	12	2	50	1.54
62888--63037	64	2.3	65	88	5	216	32	2	14	52	1.53
63180--63218	20	2.0	20	94	0	69	17	20	20	41	1.91
65655--65708	24	2.2	24	90	0	81	42	18	18	20	1.89
66447--66471	13	1.9	13	100	0	50	64	0	0	36	0.94
66655--66717	19	3.3	19	88	2	90	30	11	23	34	1.90
69276--69323	19	2.5	20	82	3	53	52	14	2	31	1.54

Tables:   1

The End!