Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002211.1 Hibiscus syriacus cultivar Beakdansim tig00004504_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55802

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
427--538
43
2.6
43
80
12
124
22
19
29
28
1.98
427--547
42
2.9
41
80
11
129
21
18
30
29
1.97
818--879
31
2.0
31
87
3
88
37
25
6
30
1.81
1915--1953
10
4.0
10
86
6
62
0
17
2
79
0.84
1917--1953
19
1.9
19
88
0
56
0
16
2
81
0.81
1915--2017
21
4.9
21
75
13
63
3
13
4
77
1.07
1945--1987
17
2.5
17
85
11
52
9
9
0
81
0.88
8891--8922
2
16.0
2
100
0
64
50
0
0
50
1.00
9376--9406
16
1.9
16
93
0
53
6
22
0
70
1.09
16869--16963
48
2.0
47
95
2
172
27
11
28
32
1.91
22620--22731
43
2.6
42
94
1
188
21
16
15
46
1.84
22935--23092
59
2.7
57
80
10
149
47
0
1
50
1.13
23038--23090
28
1.9
28
88
11
83
45
0
1
52
1.11
23048--23100
20
2.7
19
73
18
54
49
0
1
49
1.12
23108--23273
89
1.9
88
80
7
192
50
5
1
43
1.33
23434--23473
14
2.9
14
88
0
53
37
12
15
35
1.85
23476--23577
15
6.9
15
81
2
89
32
18
7
41
1.79
23476--23577
30
3.4
30
84
1
143
32
18
7
41
1.79
23485--23571
15
5.9
15
84
1
113
34
18
9
37
1.83
34125--34218
31
3.0
31
72
9
91
45
7
7
39
1.60
34251--34294
22
2.0
22
100
0
88
40
0
13
45
1.44
34929--34978
21
2.4
21
86
0
73
16
10
10
64
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39693--39719
2
13.5
2
100
0
54
48
0
0
51
1.00
40467--40520
20
2.7
20
88
0
72
42
16
14
25
1.87
44113--44157
15
3.1
14
84
12
56
35
2
2
60
1.22
52642--52682
21
2.0
21
100
0
82
26
24
19
29
1.98
55098--55189
46
2.0
46
95
4
168
31
33
8
26
1.87

Tables:   1

The End!