genome.fa.s2212.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002212.1 Hibiscus syriacus cultivar Beakdansim tig00004506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72732

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2697--2846	40	3.8	40	90	0	237	35	25	15	24	1.94
2697--2865	40	4.2	40	87	3	225	34	24	14	25	1.94
3727--3784	29	2.0	30	83	10	75	39	24	5	31	1.77
3725--3791	30	2.2	30	81	5	82	40	22	4	32	1.74
11805--11851	6	7.7	6	83	9	60	55	0	29	14	1.40
11805--11853	19	2.6	20	87	9	68	55	0	30	14	1.40
32089--32130	2	21.0	2	90	0	66	50	0	0	50	1.00
32225--32268	20	2.3	19	84	7	54	43	9	25	22	1.82
34016--34051	18	2.0	18	94	0	63	33	19	13	33	1.91
34839--34885	22	2.1	23	88	4	69	23	12	25	38	1.90
35692--35807	35	3.2	35	64	20	92	13	27	29	29	1.94
39643--40194	3	186.7	3	96	3	1032	33	0	0	66	0.92
43837--43881	21	2.1	21	87	0	63	24	8	8	57	1.57
46241--46361	21	5.8	21	81	0	152	22	18	24	34	1.96
47271--47317	16	3.1	16	75	12	53	40	0	0	59	0.97
47261--47317	30	1.9	29	85	3	78	42	0	0	57	0.98
47305--47373	33	2.1	33	86	10	97	43	0	2	53	1.15
47825--47875	20	2.5	20	74	3	57	50	19	0	29	1.48
52785--53089	159	1.9	159	96	1	567	29	19	22	27	1.98
55541--55590	23	2.2	23	96	0	91	24	10	26	40	1.86
58201--58244	22	2.0	22	90	0	70	40	4	9	45	1.56
58869--58905	7	5.7	7	81	18	53	78	0	8	13	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58868--58907	12	3.4	11	83	16	53	80	0	7	12	0.91
58869--58905	13	2.9	13	96	4	67	78	0	8	13	0.96
68333--68370	20	1.9	20	100	0	76	50	21	5	23	1.69

Tables:   1

The End!