genome.fa.s2213.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002213.1 Hibiscus syriacus cultivar Beakdansim tig00004507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108772

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3387--3412	12	2.2	12	100	0	52	61	7	23	7	1.49
4956--5009	21	2.4	25	82	17	73	62	0	3	33	1.12
4956--5041	21	3.5	24	77	19	72	62	1	2	33	1.15
4991--5144	7	22.1	7	71	18	108	55	3	1	39	1.24
4992--5147	2	85.0	2	67	25	60	55	3	1	40	1.24
4982--5102	64	1.9	65	83	5	158	60	3	1	34	1.23
4991--5061	36	1.9	36	85	2	97	61	2	0	35	1.10
5054--5144	31	3.2	29	76	17	84	51	3	2	42	1.30
8646--8673	2	14.0	2	100	0	56	50	0	0	50	1.00
11188--11216	2	14.5	2	100	0	58	48	0	0	51	1.00
18057--18094	17	2.2	17	100	0	76	26	5	50	18	1.68
24893--24944	27	1.9	27	84	7	70	28	30	3	36	1.75
28905--28952	24	2.0	24	100	0	96	29	29	8	33	1.86
29297--29355	29	2.2	26	76	21	68	25	11	8	54	1.65
29386--29536	20	8.3	19	66	16	77	33	5	13	48	1.65
29386--29537	54	2.8	54	96	3	272	32	5	13	48	1.64
34095--34244	20	8.3	19	66	18	77	33	5	13	48	1.65
34095--34240	53	2.8	53	97	1	276	32	5	13	47	1.66
34456--34518	23	3.0	20	67	15	54	26	6	14	52	1.65
37141--37215	31	2.4	32	88	8	118	10	10	37	41	1.75
37901--37961	31	2.0	31	86	0	86	42	8	9	39	1.68
40015--40170	31	5.0	31	96	1	278	38	23	19	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41175--41217	21	2.0	21	86	0	59	16	25	27	30	1.97
44601--44668	31	2.2	31	86	0	91	29	11	10	48	1.73
47685--47754	31	2.3	31	87	0	95	37	5	8	48	1.58
48020--48066	11	3.5	13	74	25	53	61	0	0	38	0.96
48336--48442	37	3.0	36	90	5	155	50	18	8	22	1.73
49116--49208	20	4.6	20	77	4	96	40	18	22	18	1.91
49133--49208	21	3.7	21	75	3	82	42	18	22	17	1.89
49116--49208	41	2.3	41	94	0	168	40	18	22	18	1.91
49135--49269	41	3.3	41	80	6	114	38	21	20	20	1.94
49197--49311	20	5.7	20	82	6	115	31	26	18	24	1.97
49194--49331	41	3.4	41	79	6	154	34	24	17	23	1.96
51126--51170	18	2.5	18	92	0	81	24	44	17	13	1.85
51663--51707	20	2.3	20	80	3	56	42	15	24	17	1.88
51707--51764	14	3.9	14	77	16	62	48	25	18	6	1.73
51691--51781	32	2.8	33	93	3	157	47	23	19	9	1.79
51800--51855	14	3.7	14	78	17	67	8	16	25	50	1.74
51793--51871	32	2.4	33	93	2	142	11	18	22	46	1.81
51812--51929	20	6.4	19	77	11	95	13	20	24	41	1.88
54122--54166	23	2.0	23	86	0	63	28	20	20	31	1.97
56636--56785	19	8.7	19	69	20	114	44	20	22	14	1.86
56636--56762	33	3.8	33	87	4	193	43	19	22	14	1.88
56637--56763	66	1.9	66	96	0	236	42	20	22	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56616--56785	19	9.7	19	70	18	109	42	20	21	14	1.88
56781--56823	20	2.2	20	87	4	61	16	18	23	41	1.89
56809--56842	14	2.4	14	85	0	50	8	23	20	47	1.78
56964--57000	14	2.6	14	100	0	74	48	21	0	29	1.50
58351--58417	21	3.2	21	68	4	55	19	20	35	23	1.95
59581--59623	21	2.0	22	82	13	54	48	2	4	44	1.36
60477--60614	19	7.1	19	85	4	177	46	19	21	13	1.83
60477--60614	39	3.6	38	86	3	177	46	19	21	13	1.83
60610--60654	19	2.4	19	88	0	72	6	15	24	53	1.66
61207--61259	20	2.7	20	93	0	88	26	20	28	24	1.99
61268--61321	20	2.7	20	85	0	81	29	18	20	31	1.96
61310--61365	20	2.7	21	83	5	69	14	23	19	42	1.88
74663--74705	11	3.9	11	78	0	50	13	11	23	51	1.74
74662--74736	22	3.5	22	88	1	107	13	8	21	57	1.61
74952--74999	12	4.0	12	88	0	78	41	12	22	22	1.88
76187--76299	20	5.6	20	82	3	136	40	17	23	17	1.91
76285--76362	41	1.9	41	89	0	120	38	23	15	23	1.92
76288--76381	20	4.7	20	80	7	91	32	25	17	24	1.96
76900--76985	19	4.5	19	88	1	118	48	23	16	11	1.78
76981--77112	19	7.1	19	79	11	139	12	21	21	44	1.84
76986--77062	39	2.0	39	87	5	111	9	19	25	45	1.80
79114--79236	42	2.9	42	80	2	122	22	35	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80594--80629	14	2.6	14	95	0	63	30	0	25	44	1.54
80809--80940	19	7.7	19	65	24	96	15	22	18	43	1.88
80815--80940	33	3.8	32	86	9	182	15	22	19	43	1.87
80806--80939	66	2.0	67	94	1	234	17	22	18	41	1.90
83210--83234	12	2.1	12	100	0	50	0	28	0	72	0.86
83421--83467	24	2.0	24	91	0	76	34	17	19	29	1.94
83425--83476	24	2.2	24	82	0	59	36	19	17	26	1.94
84499--84556	20	2.9	20	94	0	98	37	22	22	17	1.93
84575--84747	19	9.6	19	85	10	231	15	21	16	46	1.83
84575--84747	52	3.2	52	90	4	256	15	21	16	46	1.83
86742--86808	19	3.5	19	79	4	80	38	23	22	14	1.92
86723--86807	20	4.4	19	77	4	71	41	24	18	15	1.89
86797--86836	14	2.9	14	100	0	80	50	27	15	7	1.70
86848--86942	19	5.6	17	72	21	76	11	20	23	45	1.83
86870--86927	14	3.9	14	79	16	71	8	17	25	48	1.75
86853--86942	32	2.8	33	94	3	164	11	18	23	46	1.81
86928--86984	19	2.9	19	82	5	69	21	22	24	31	1.98
87447--87491	18	2.5	18	85	0	63	11	15	46	26	1.79
89025--89068	22	2.0	22	95	0	79	18	15	45	20	1.85
89275--89352	41	1.9	41	89	0	120	23	15	23	38	1.92
89236--89349	20	5.7	20	77	10	90	25	16	24	33	1.96
89275--89370	41	2.3	41	82	3	113	21	18	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90496--90538	19	2.4	18	82	14	54	53	4	13	27	1.60
92473--92608	57	2.4	57	87	8	188	16	9	25	48	1.76
95452--95493	18	2.3	18	95	0	75	23	11	33	30	1.91
95819--95887	29	2.4	29	87	0	102	14	31	28	24	1.95
95833--95894	29	2.1	29	87	0	88	17	33	25	22	1.96
99960--99990	14	2.1	15	94	5	55	67	0	6	25	1.14
100210--100284	33	2.3	32	93	2	123	56	8	5	30	1.51
101322--101364	20	2.2	20	83	8	52	20	2	11	65	1.36
101605--101654	3	16.7	3	100	0	100	68	0	0	32	0.90
103306--103373	25	2.8	24	82	6	82	41	0	20	38	1.53
104674--104744	20	3.5	20	100	0	142	21	19	15	43	1.87
104672--104776	40	2.6	38	86	10	131	20	18	19	42	1.89

Tables:   1

The End!