Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002216.1 Hibiscus syriacus cultivar Beakdansim tig00004510_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77084

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2008--2063
29
1.9
29
96
0
103
39
7
8
44
1.63
2008--2071
29
2.2
29
91
0
101
35
7
7
48
1.61
2833--3131
131
2.3
131
82
4
352
31
10
14
44
1.78
4600--4642
2
21.5
2
100
0
86
48
0
0
51
1.00
5362--5447
37
2.3
38
78
15
106
45
0
3
51
1.18
13682--13726
22
2.1
21
84
12
56
53
6
0
40
1.27
21617--21672
16
3.4
16
79
11
60
76
0
19
3
0.93
21619--21676
22
2.6
23
86
5
84
77
0
18
3
0.91
21624--21676
16
3.2
16
86
5
70
77
0
18
3
0.92
23954--24707
45
17.8
42
78
9
526
24
17
18
39
1.92
23993--24306
42
7.9
37
77
15
233
23
19
18
38
1.93
23954--24393
241
1.8
240
81
8
543
24
19
17
38
1.93
24268--24757
45
10.9
45
81
7
439
24
16
18
40
1.91
23989--24722
134
5.7
133
78
11
555
24
17
18
39
1.91
24691--24813
51
2.4
50
81
9
135
28
18
17
35
1.93
25410--25908
133
3.7
134
82
4
578
30
18
18
32
1.95
25400--25903
267
1.9
267
83
6
651
29
18
19
32
1.95
27220--27251
16
2.0
16
93
0
55
84
0
12
3
0.74
29459--29531
34
2.1
34
82
12
87
69
4
1
24
1.13
32586--32627
6
6.8
6
84
10
50
4
16
0
78
0.91
51347--51411
30
2.1
31
94
2
114
40
6
7
46
1.58
56146--56235
42
2.1
42
79
0
99
34
16
21
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55973--56350
207
1.8
206
87
2
562
31
17
19
31
1.95
60332--60365
16
2.1
17
89
10
54
44
2
2
50
1.32
65682--65733
21
2.4
22
81
15
63
44
11
34
9
1.73
66168--66307
44
3.2
44
80
0
127
34
19
16
30
1.94
66234--66338
44
2.4
44
78
0
111
34
19
14
32
1.91
66411--66497
43
2.0
43
84
4
113
22
24
21
31
1.99
68596--68898
106
2.8
107
83
4
369
33
20
17
28
1.96
68596--68898
54
5.7
54
86
3
371
33
20
17
28
1.96
68912--69024
58
1.9
60
87
5
167
35
14
23
27
1.93
70016--70072
22
2.5
22
78
16
62
24
12
5
57
1.55
74539--74612
37
2.0
37
84
5
96
32
16
17
33
1.92
74840--75053
39
5.5
39
90
2
315
29
17
15
36
1.91
74840--75045
77
2.6
79
88
3
310
30
17
15
35
1.92
75158--75407
92
2.8
90
83
7
312
32
22
18
26
1.97
76902--76928
14
1.9
14
100
0
54
7
7
3
81
0.97
76891--76935
23
2.0
23
82
8
56
13
4
4
77
1.07
76904--76961
21
2.7
21
80
15
57
18
3
5
72
1.18

Tables:   1

The End!