genome.fa.s2217.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002217.1 Hibiscus syriacus cultivar Beakdansim tig00004512_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61734

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554--585	14	2.2	15	94	5	57	53	0	0	46	1.00
4750--4802	24	2.2	24	79	0	61	54	15	3	26	1.57
7795--7952	77	2.1	77	100	0	316	28	25	18	27	1.98
12762--12831	31	2.4	30	86	13	101	52	7	12	27	1.65
18950--19017	29	2.3	30	85	12	88	45	8	4	41	1.55
23241--23275	2	17.5	2	100	0	70	51	0	0	48	1.00
24601--25446	255	3.3	256	84	3	1096	28	15	20	35	1.94
24601--25549	256	3.7	252	79	8	941	28	15	20	35	1.93
37417--37450	15	2.3	15	89	0	50	50	8	2	38	1.49
41804--41852	22	2.3	21	82	3	62	67	6	8	18	1.37
45747--45776	9	3.2	9	90	9	51	20	20	0	60	1.37
46792--46956	64	2.6	65	83	4	203	30	23	17	28	1.97
48917--48956	21	1.9	21	90	10	64	55	5	7	32	1.50
52767--52844	23	3.5	22	74	13	79	28	25	21	24	1.99
55426--55589	64	2.5	65	81	4	181	29	22	17	29	1.97
57156--57187	13	2.4	14	90	10	50	78	0	12	9	0.97
57123--57228	34	3.1	35	79	15	89	77	1	14	6	1.05
59622--59835	117	1.8	118	88	3	333	36	12	25	25	1.91
59770--59833	20	3.3	19	69	20	51	42	9	23	25	1.84
59622--59862	117	2.1	118	85	2	324	36	13	24	25	1.92
60049--60668	117	5.3	118	79	7	629	37	14	22	26	1.92
60643--60854	40	5.2	40	78	7	187	31	25	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61226--61269	12	3.6	12	87	3	61	50	40	9	0	1.34

Tables:   1

The End!