genome.fa.s2218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002218.1 Hibiscus syriacus cultivar Beakdansim tig00004515_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60987

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5442--5496	21	2.6	21	97	0	101	32	25	20	21	1.97
17878--17999	61	2.0	60	90	7	194	32	12	15	39	1.85
18246--18283	6	6.3	6	100	0	76	52	0	15	31	1.43
20189--20309	57	2.1	56	83	5	154	42	2	14	40	1.59
20443--20499	24	2.4	24	76	2	62	26	22	19	31	1.98
22550--22674	47	2.8	45	87	9	175	30	22	8	39	1.83
22550--22688	47	3.2	41	80	14	131	30	23	7	38	1.83
26573--26642	17	4.3	17	70	21	51	8	21	0	70	1.14
26578--26670	33	2.8	33	81	15	95	7	21	0	70	1.11
26606--26661	21	2.8	21	82	15	73	8	17	0	73	1.08
26627--26690	18	3.6	18	87	4	76	4	17	1	76	1.03
26593--26668	12	5.9	13	72	13	59	6	19	0	73	1.04
27833--27932	34	2.8	35	87	6	148	45	14	11	30	1.79
27831--27968	37	3.8	37	82	4	147	42	13	11	32	1.79
32575--32604	10	3.0	10	95	0	51	83	10	6	0	0.81
32557--32611	20	2.7	21	76	13	62	80	5	14	0	0.89
32558--32630	17	4.5	16	72	16	53	76	8	15	0	1.00
33281--33335	22	2.5	22	100	0	110	36	27	12	23	1.91
34292--34390	36	2.7	36	88	1	135	26	19	16	38	1.92
34348--34522	65	2.6	65	84	4	224	33	21	9	36	1.85
35126--35786	105	6.3	105	90	3	940	33	26	18	22	1.96
36333--36434	34	2.9	36	89	5	163	44	13	13	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36331--36468	37	3.8	37	84	4	156	42	13	13	31	1.82
37096--37129	17	2.0	17	88	11	52	35	2	0	61	1.11
37360--37389	2	15.0	2	92	0	51	46	0	0	53	1.00
38347--38431	17	5.1	17	77	17	97	36	17	9	36	1.82
39647--39771	47	2.8	45	85	9	166	30	21	8	40	1.82
45937--46046	57	1.9	57	90	3	177	38	4	18	39	1.71
46143--46222	24	3.3	24	85	0	106	21	17	22	38	1.93
49168--49237	31	2.2	32	82	7	90	44	11	7	37	1.68
49535--49561	2	13.5	2	100	0	54	51	0	0	48	1.00
51075--51107	2	16.5	2	100	0	66	48	0	0	51	1.00
54297--54341	23	2.0	23	87	12	67	75	0	4	20	0.97
54299--54343	15	2.9	15	86	3	54	73	0	4	22	1.01
54395--54488	21	4.2	21	76	17	84	69	3	7	20	1.27
56125--56225	34	2.9	35	82	7	125	31	8	19	39	1.83
56224--56334	36	3.2	35	81	10	120	40	11	18	28	1.86
56224--56334	34	3.2	34	80	7	116	40	11	18	28	1.86
56700--56936	99	2.3	99	86	6	323	20	18	25	35	1.95
58323--58369	18	2.5	19	79	6	51	57	2	2	38	1.23
58872--59152	42	6.5	43	76	14	238	49	6	18	26	1.70
58872--59148	131	2.1	130	91	4	452	48	6	18	27	1.71
58918--59186	89	3.1	85	74	12	226	49	6	17	26	1.70
58872--59186	42	7.3	43	73	15	161	48	6	18	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58872--59186	131	2.4	129	85	7	377	48	6	18	26	1.72

Tables:   1

The End!