genome.fa.s2219.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002219.1 Hibiscus syriacus cultivar Beakdansim tig00004516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88567

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2918--3468	98	5.6	98	75	8	376	35	10	19	34	1.86
3214--3441	96	2.3	98	80	7	239	37	12	17	32	1.87
2895--3652	100	7.7	100	74	8	416	34	10	20	34	1.88
8822--8870	20	2.5	20	96	0	89	55	20	12	12	1.68
9338--9389	25	2.1	25	100	0	104	32	15	15	36	1.89
22211--22241	16	1.9	16	93	0	53	32	6	25	35	1.82
27500--27551	27	1.9	27	92	0	86	32	19	28	19	1.96
27497--27568	30	2.6	27	80	6	81	31	22	27	18	1.97
27549--27588	18	2.2	18	90	0	62	27	30	30	12	1.93
34552--34618	20	3.3	20	87	0	89	40	20	17	20	1.92
35149--35206	20	2.9	20	100	0	116	51	20	13	13	1.75
35194--35220	14	1.9	14	100	0	54	51	33	14	0	1.43
35153--35233	20	4.3	20	77	17	93	49	24	14	11	1.76
35237--35287	20	2.5	20	77	0	57	15	13	19	50	1.77
36804--36853	21	2.4	21	93	0	82	20	14	32	34	1.92
36845--36966	63	1.9	63	81	3	147	24	12	31	31	1.92
38582--38620	20	2.0	20	89	0	60	20	17	17	43	1.88
46570--46620	23	2.3	23	83	6	70	17	43	21	17	1.88
46602--46641	21	1.9	21	89	0	62	25	40	25	10	1.86
50953--50986	12	2.8	12	90	0	50	14	0	29	55	1.40
51561--51599	15	2.5	15	83	4	51	66	0	5	28	1.12
51768--51916	60	2.5	60	75	6	142	36	12	22	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51727--51876	20	7.6	20	66	14	62	38	10	21	30	1.86
51860--51932	20	3.6	20	88	1	110	31	15	23	30	1.95
51963--52003	20	2.0	20	85	0	55	31	9	29	29	1.89
51990--52039	19	2.6	19	83	3	55	26	14	26	34	1.94
62562--62675	3	35.7	3	72	11	84	36	0	4	57	1.25
62581--62659	16	4.9	16	85	0	95	36	0	5	58	1.20
62587--62629	13	3.1	13	78	18	50	37	0	4	58	1.19
62562--62675	19	6.3	18	74	13	76	36	0	4	57	1.25
62587--62661	29	2.6	29	85	8	91	36	0	4	60	1.16
63888--64036	76	2.0	76	94	2	264	21	16	16	45	1.85
64737--64789	28	1.9	28	92	3	90	26	0	0	73	0.83
64748--64800	23	2.3	23	84	9	65	22	0	1	75	0.90
66618--66668	22	2.3	22	96	0	93	33	19	35	11	1.88

Tables:   1

The End!