genome.fa.s222.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000222.1 Hibiscus syriacus cultivar Beakdansim tig00000392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107274

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5072--5118	24	2.0	24	95	0	85	42	12	14	29	1.83
9498--9613	24	4.8	24	88	6	164	26	16	17	39	1.90
9495--9613	48	2.5	48	91	2	186	26	15	17	39	1.90
13193--13298	38	2.9	36	87	10	146	49	16	4	30	1.66
15805--15843	19	2.1	18	86	13	53	56	0	12	30	1.37
20801--20846	23	2.0	23	100	0	92	34	4	8	52	1.52
31077--31111	17	2.1	17	100	0	70	11	37	0	51	1.38
34155--34222	30	2.3	30	86	0	100	29	20	7	42	1.79
38964--39023	24	2.5	24	86	8	77	38	20	0	41	1.52
39470--39588	37	3.4	34	81	4	114	23	16	13	46	1.83
39484--39625	37	3.8	37	82	0	149	24	14	12	48	1.78
39484--39676	74	2.6	74	84	1	217	23	15	12	48	1.79
39683--39999	45	7.0	45	84	3	363	23	15	18	41	1.89
41942--42132	37	5.2	37	76	9	140	23	14	15	47	1.81
41943--42132	74	2.6	74	78	6	179	23	14	15	46	1.82
42139--42722	45	13.0	45	83	1	625	24	15	19	40	1.90
45880--46099	43	5.1	43	76	3	174	33	16	24	25	1.96
45880--46099	86	2.6	84	80	5	208	33	16	24	25	1.96
45936--46099	85	1.9	86	82	3	206	34	17	23	24	1.95
49856--50035	79	2.3	76	85	5	236	34	20	13	31	1.92
50637--50716	28	2.9	29	78	12	87	21	21	23	33	1.97
51865--51907	23	2.0	23	86	13	65	27	25	11	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54512--54554	19	2.3	19	95	0	77	0	18	9	72	1.11
55046--55140	3	31.7	3	93	0	154	62	0	3	34	1.11
55472--55574	40	2.5	41	92	4	163	19	22	10	47	1.80
55514--56027	227	2.3	226	97	1	956	28	20	12	37	1.90
55514--56066	113	4.9	113	87	3	772	29	20	13	37	1.90
56757--57117	84	4.3	84	95	0	643	34	21	13	29	1.93
58135--58217	1	83.0	1	80	0	94	0	9	0	90	0.46
58134--58220	9	9.3	9	85	10	104	0	11	0	88	0.51
58135--58216	19	4.3	19	87	6	112	0	9	0	90	0.46
58135--58217	40	2.1	40	90	4	132	0	9	0	90	0.46
58134--58220	28	3.1	27	88	5	120	0	11	0	88	0.51
60703--60736	11	2.9	12	86	8	52	41	29	8	20	1.82
69554--69596	22	2.0	21	86	4	59	58	2	2	37	1.24
70490--70531	20	2.1	20	95	0	75	0	19	7	73	1.05
71023--71111	3	29.7	3	88	0	115	59	1	5	33	1.28
73041--73097	7	8.1	7	82	0	60	45	33	1	19	1.61
73037--73100	21	3.0	21	80	15	78	46	32	1	18	1.59
84922--85005	37	2.2	37	85	2	105	28	7	11	52	1.64
89200--89317	59	2.0	59	96	0	218	28	16	17	37	1.92
96693--96782	39	2.3	39	88	7	137	31	8	8	51	1.64

Tables:   1

The End!