Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002220.1 Hibiscus syriacus cultivar Beakdansim tig00004517_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70239

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2388--2418
15
2.0
16
93
6
55
19
0
29
51
1.47
2961--3017
24
2.4
24
87
0
87
28
28
21
22
1.99
4066--4110
20
2.2
20
100
0
90
15
28
35
20
1.93
4492--4533
15
2.9
15
85
3
59
16
2
9
71
1.23
4619--4668
24
2.1
24
88
7
75
26
2
14
58
1.47
10095--10136
15
2.9
15
85
3
59
16
2
9
71
1.23
10222--10271
24
2.1
24
88
7
75
26
2
14
58
1.47
15663--15701
20
1.9
21
94
5
71
33
12
20
33
1.91
27284--27344
21
2.9
21
80
4
70
45
1
3
49
1.28
27328--27381
17
3.0
17
83
8
54
44
1
3
50
1.30
27243--27354
11
10.4
11
68
17
74
46
1
3
48
1.30
27443--27490
17
2.9
16
75
9
51
52
6
0
41
1.27
27677--28162
68
7.1
70
71
21
211
50
2
8
38
1.44
27863--27926
9
7.6
9
72
19
57
53
3
9
34
1.49
27066--28074
2
506.0
2
63
22
139
50
2
6
40
1.42
27942--28291
172
2.1
168
83
8
428
52
2
8
36
1.44
27993--28359
22
17.0
21
71
20
180
52
1
8
37
1.43
28166--28410
101
2.5
103
81
15
286
52
2
8
37
1.45
28228--28382
66
2.6
57
76
17
168
52
3
7
36
1.46
27494--28390
8
121.2
8
66
27
219
52
2
7
37
1.43
27991--28373
150
2.6
149
76
15
329
52
2
8
37
1.43
28395--28776
161
2.5
155
88
8
575
51
6
7
35
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28395--28713
81
3.9
82
93
4
549
51
6
6
35
1.54
28636--28772
67
2.0
68
91
6
226
52
5
6
35
1.52
30203--30273
32
2.2
32
87
7
108
38
11
22
28
1.88
30204--30265
16
3.9
16
91
0
106
38
11
22
27
1.88
34112--34141
15
2.0
15
100
0
60
60
6
6
26
1.47
34985--35134
59
2.5
61
86
4
207
34
16
15
33
1.90
40595--40687
20
4.6
20
78
4
96
34
20
17
27
1.95
40692--40740
20
2.5
20
86
0
71
40
18
18
22
1.91
41255--41306
20
2.6
20
78
0
59
19
15
17
48
1.82
43563--43702
66
2.2
60
86
7
181
30
0
17
51
1.50
43761--43816
20
2.8
20
75
0
67
41
17
19
21
1.91
43825--43863
20
2.0
20
89
0
60
15
20
25
38
1.92
44077--44163
39
2.2
39
95
0
156
17
13
20
48
1.81
44475--44511
18
2.1
18
89
0
56
51
10
5
32
1.60
44467--44519
24
2.2
24
89
0
79
47
13
5
33
1.66
47415--47439
12
2.1
12
100
0
50
0
28
0
72
0.86
47630--47681
24
2.2
24
82
0
59
36
21
19
23
1.95
47793--47827
12
2.9
12
91
0
52
14
0
28
57
1.38
48379--48416
16
2.5
15
84
12
51
65
0
5
28
1.14
48572--48744
20
8.7
20
70
11
70
24
13
20
41
1.89
48573--48644
19
3.7
19
83
7
74
30
12
20
36
1.90
48633--48779
40
3.7
40
74
10
131
20
16
21
41
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48590--48742
60
2.5
61
77
11
163
22
14
20
41
1.89
48688--48746
20
3.0
20
82
0
73
18
16
22
42
1.89
48710--48756
20
2.3
20
85
7
69
19
19
23
38
1.93
48658--48823
80
2.1
80
84
4
210
24
15
22
36
1.93
52292--52336
21
2.1
21
100
0
90
55
4
15
24
1.59
54876--54969
25
3.8
25
98
0
179
29
12
22
35
1.91
55452--55485
16
2.1
16
94
0
59
38
17
23
20
1.93
58472--58502
16
1.9
16
93
0
53
64
0
6
29
1.18
62291--62331
21
2.0
21
90
0
64
24
17
24
34
1.96
63357--63423
19
3.5
19
91
0
107
31
22
26
19
1.98
64109--64165
23
2.5
23
91
0
87
17
26
28
28
1.98
67427--67460
16
2.1
16
88
0
50
64
2
20
11
1.39
69659--69711
19
2.8
19
97
0
97
30
18
26
24
1.98

Tables:   1

The End!