genome.fa.s2221.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002221.1 Hibiscus syriacus cultivar Beakdansim tig00004518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74866

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3563--3599	19	2.0	18	89	5	56	45	0	21	32	1.52
8215--8274	22	2.7	22	86	0	84	40	15	15	30	1.87
8921--9090	45	3.8	45	89	0	250	25	23	19	31	1.98
9109--9211	45	2.3	45	89	0	152	25	22	18	33	1.96
8988--9467	121	3.9	121	84	7	545	23	22	20	33	1.97
9236--9522	45	6.4	45	86	6	377	21	23	21	32	1.98
9530--9643	45	2.5	45	85	2	156	25	22	21	30	1.99
9455--9595	76	1.9	73	86	4	201	24	21	22	31	1.98
9416--9878	121	3.7	120	86	4	539	24	22	20	31	1.98
9657--9878	45	5.0	45	86	4	288	23	24	19	32	1.98
8921--9878	421	2.3	420	91	1	1553	23	22	20	32	1.98
9674--9878	88	2.3	89	86	3	279	24	24	19	32	1.97
10075--10120	3	15.7	3	86	4	67	39	0	0	60	0.97
10073--10114	21	2.0	21	100	0	84	42	0	0	57	0.99
11454--11498	13	3.3	13	78	9	54	33	2	2	62	1.20
11555--11945	141	2.8	140	80	7	400	38	6	8	45	1.62
11941--11977	18	2.1	18	90	10	58	54	0	0	45	1.00
17518--17565	18	2.7	18	80	9	62	41	0	4	54	1.20
21868--21904	5	7.2	5	87	6	56	35	0	0	64	0.94
21868--21914	15	3.1	16	87	6	62	31	0	2	65	1.04
25230--25263	17	1.9	17	88	5	50	76	5	2	14	1.09
25697--25756	21	2.9	21	78	7	61	26	11	30	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27440--27486	15	3.3	14	79	5	51	68	0	2	29	1.02
30395--30487	22	4.2	22	88	0	141	15	23	26	34	1.94
34327--34441	61	1.9	61	89	3	178	23	18	27	30	1.97
34551--34680	46	2.9	45	80	7	156	42	7	18	31	1.78
36364--36454	45	2.0	46	97	2	175	37	23	15	24	1.93
37498--37537	21	1.9	21	84	0	53	42	12	25	20	1.86
37898--37927	13	2.2	14	94	5	53	53	0	0	46	1.00
38818--38856	11	3.3	11	86	13	51	25	28	20	25	1.99
39389--39474	23	3.7	23	75	18	88	26	25	27	19	1.99
41673--41750	23	3.3	23	73	21	81	26	25	28	19	1.99
48159--48202	22	2.0	22	91	4	72	25	29	22	22	1.99
48753--48838	23	3.7	23	75	18	88	26	25	27	19	1.99
55230--55273	22	2.0	22	91	4	72	25	29	22	22	1.99
55824--55909	23	3.7	23	76	18	97	26	26	27	18	1.98
56588--56628	20	2.0	20	95	0	73	17	17	34	31	1.93
64678--64785	44	2.5	44	79	0	108	37	13	24	24	1.92
65713--65884	67	2.7	65	81	6	190	25	21	18	34	1.96
65944--66234	82	3.5	82	86	1	395	36	21	16	24	1.94
66328--66388	31	1.9	33	86	6	90	36	16	0	47	1.47
66660--66713	26	2.2	24	86	6	72	62	9	3	24	1.41
68557--68593	14	2.6	15	83	12	51	16	29	8	45	1.76
70805--70993	76	2.5	76	84	5	233	30	14	11	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70974--71271	39	7.7	39	85	4	390	29	16	15	38	1.89
71296--71640	131	2.6	132	82	5	408	34	15	23	25	1.95
71589--71685	40	2.4	40	96	0	176	43	15	24	16	1.87
74320--74463	75	1.9	75	86	0	207	27	14	12	45	1.81

Tables:   1

The End!