genome.fa.s2222.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002222.1 Hibiscus syriacus cultivar Beakdansim tig00004520_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93303

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--233	2	109.0	2	76	4	190	46	7	3	42	1.50
3034--3076	21	2.0	21	100	0	86	39	9	18	32	1.83
5224--5340	59	2.0	59	85	6	157	26	23	22	27	2.00
7853--7877	3	8.3	3	100	0	50	32	32	0	36	1.58
9770--9822	19	2.5	22	77	22	60	62	7	0	30	1.23
20702--21001	42	7.0	42	76	12	220	48	7	16	27	1.72
20712--20981	86	3.2	86	80	8	268	48	7	16	27	1.72
20714--21008	83	3.5	82	78	10	238	49	7	16	27	1.71
21508--21532	4	6.2	4	100	0	50	48	0	0	52	1.00
21709--21755	24	2.0	24	86	0	67	55	10	6	27	1.58
33496--34554	521	2.0	521	97	0	2010	37	12	11	38	1.79
39399--39535	62	2.3	58	88	5	193	37	21	2	37	1.69
42111--42182	37	1.9	37	88	0	108	33	13	22	30	1.93
44634--44678	23	2.0	22	83	12	56	37	0	0	62	0.96
45211--45236	6	4.3	6	100	0	52	15	53	30	0	1.42
48969--49107	41	3.4	41	88	2	208	18	21	23	35	1.95
48994--49209	102	2.1	102	91	1	353	16	21	24	37	1.93
49042--49168	61	2.1	61	92	2	211	14	22	23	39	1.91
49100--49212	41	2.8	41	98	0	217	16	19	25	38	1.93
48969--49237	143	1.9	144	95	0	486	17	21	23	37	1.94
49100--49253	82	1.9	81	85	8	213	17	19	24	38	1.93
49499--49547	3	16.3	3	100	0	98	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50912--50958	3	15.3	3	95	4	85	63	2	0	34	1.06
52108--52147	15	2.7	15	100	0	80	35	0	5	60	1.19
52123--52174	26	2.0	26	85	7	70	34	1	1	61	1.18
52582--52814	42	5.7	42	77	4	163	36	16	17	29	1.91
52698--52856	80	2.0	81	87	3	232	37	14	17	30	1.90
52581--52862	40	6.9	40	75	6	192	36	15	17	30	1.91
55758--55811	5	10.8	5	78	7	56	5	18	0	75	0.98
55758--55811	25	2.2	25	86	6	74	5	18	0	75	0.98
57371--57752	163	2.3	163	93	0	629	35	30	10	22	1.89
60392--60452	32	1.9	32	93	0	104	22	22	26	27	1.99
60392--60469	32	2.4	32	86	0	102	25	21	25	26	2.00
60457--60489	16	2.1	16	94	0	57	30	21	30	18	1.97
63712--63746	2	17.5	2	100	0	70	48	0	0	51	1.00
64469--64532	3	21.3	3	96	0	119	32	0	0	67	0.91
67086--67146	31	2.0	31	83	6	79	34	1	6	57	1.34
67068--67145	31	2.7	27	70	22	68	38	2	5	53	1.37
68196--68431	131	1.8	131	81	0	301	44	16	10	29	1.81
70477--70516	3	13.3	3	100	0	80	65	0	0	35	0.93
70515--70543	3	9.7	3	100	0	58	34	0	31	34	1.58
72125--72192	35	1.9	35	90	0	109	27	8	26	36	1.86
72162--72278	47	2.5	48	84	4	148	27	11	23	36	1.90
75645--75768	64	2.0	63	93	4	198	29	19	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78439--78503	23	2.9	23	81	4	80	26	18	24	30	1.98
86073--86124	19	2.7	19	90	0	86	17	21	30	30	1.96
86189--86226	20	1.9	20	94	0	67	23	21	28	26	1.99
87071--87105	2	17.5	2	100	0	70	51	48	0	0	1.00
87284--87348	31	2.1	31	97	0	121	33	24	21	20	1.97
88109--88162	20	2.4	23	82	11	69	25	22	18	33	1.97
88150--88308	64	2.5	64	81	6	189	23	24	19	32	1.98
91493--91575	31	2.8	28	77	18	71	34	25	19	20	1.96
91516--91581	31	2.1	31	94	0	114	34	24	19	21	1.96
92378--92435	20	2.6	22	89	10	84	25	22	20	31	1.98
92423--92580	61	2.5	64	81	7	189	24	25	18	31	1.98

Tables:   1

The End!