genome.fa.s2223.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002223.1 Hibiscus syriacus cultivar Beakdansim tig00004523_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139199

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359--414	21	2.7	21	94	5	96	28	19	25	26	1.99
1400--1496	41	2.4	41	92	0	167	27	22	22	26	1.99
1276--1635	175	2.1	175	88	3	537	30	18	23	27	1.97
1441--3481	134	15.2	134	82	1	2234	30	16	22	29	1.96
7408--7434	7	3.9	7	100	0	54	40	0	0	59	0.98
8484--8850	131	2.8	131	88	0	556	39	16	11	32	1.84
11445--11470	2	13.0	2	100	0	52	50	0	0	50	1.00
12399--12491	21	4.5	21	81	12	120	25	13	33	26	1.94
12441--12511	20	3.5	20	73	17	74	28	12	28	30	1.93
12420--12514	41	2.3	41	96	0	172	27	13	30	28	1.94
12481--12554	20	3.7	20	83	0	94	33	14	24	27	1.94
13665--13881	41	5.3	41	82	1	247	34	17	20	28	1.95
13661--13881	122	1.8	123	84	3	302	34	17	19	28	1.95
14125--14169	7	6.9	7	82	10	51	2	24	0	73	0.95
14646--14687	19	2.2	19	91	0	66	28	26	19	26	1.98
15713--15750	18	2.1	18	100	0	76	15	15	23	44	1.85
15890--15935	20	2.3	20	96	0	83	30	26	2	41	1.68
17535--17901	131	2.8	130	89	1	554	38	17	12	31	1.87
18499--18581	28	2.7	29	74	10	69	63	8	7	20	1.46
19512--19537	10	2.6	10	100	0	52	0	11	0	88	0.52
21379--21564	60	3.1	60	81	3	194	40	3	22	33	1.71
24236--24278	22	2.0	21	86	4	59	41	34	0	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25451--25480	11	2.6	11	94	5	51	6	3	0	90	0.56
32195--32253	2	29.5	2	93	6	102	50	0	1	47	1.11
32191--32299	8	13.1	8	76	20	55	51	0	4	44	1.22
33184--33283	3	33.0	3	75	13	89	39	1	2	58	1.16
33184--33283	13	7.2	14	77	15	93	39	1	2	58	1.16
42002--42055	20	2.7	20	91	0	90	25	24	18	31	1.97
41897--42169	139	2.0	139	88	1	404	32	16	17	33	1.93
42337--42413	3	25.0	3	73	15	59	37	1	2	58	1.20
42509--42550	16	2.6	16	92	0	66	30	35	16	16	1.92
45714--45756	17	2.5	17	85	7	61	51	39	9	0	1.34
72778--73048	149	1.8	149	81	3	339	34	20	22	22	1.97
76426--76482	5	11.0	5	83	7	60	80	0	7	12	0.89
76426--76481	15	3.9	15	81	13	82	82	0	7	10	0.85
76411--76482	32	2.3	32	85	7	94	80	0	8	11	0.90
76411--76482	37	2.0	36	88	2	108	80	0	8	11	0.90
79932--79982	23	2.2	24	82	3	59	58	3	11	25	1.50
81187--81224	20	2.0	20	89	5	60	44	10	5	39	1.61
83362--83410	19	2.5	19	83	6	53	53	6	10	30	1.59
83408--83458	23	2.2	24	82	3	59	58	3	11	25	1.50
84663--84700	20	2.0	20	89	5	60	44	10	5	39	1.61
89500--89542	17	2.5	17	96	0	77	39	27	11	20	1.88
89676--89706	15	2.1	15	93	0	53	22	6	0	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90913--90949	19	1.9	19	100	0	74	10	37	40	10	1.75
95067--95101	3	11.7	3	87	0	52	5	34	25	34	1.80
97094--97251	21	7.8	20	70	7	77	37	24	17	19	1.93
97219--97412	20	9.6	20	76	8	76	35	25	19	19	1.95
97219--97412	40	4.8	39	82	3	199	35	25	19	19	1.95
97219--97411	60	3.2	60	83	0	251	35	25	19	19	1.95
97794--97864	33	2.2	33	92	0	115	11	22	18	47	1.80
97985--98039	14	3.6	14	73	21	56	41	23	25	9	1.83
97985--98055	33	2.2	33	94	0	124	43	25	22	8	1.81
98051--98148	19	5.7	19	70	22	81	10	24	22	42	1.84
98073--98162	14	5.7	14	74	23	81	8	25	23	42	1.83
98056--98170	33	3.5	33	95	0	212	9	24	20	45	1.81
99866--100243	93	4.1	93	98	1	726	22	12	18	46	1.82
100287--100415	19	7.3	19	75	17	125	45	28	17	8	1.77
100323--100415	33	2.8	32	91	4	150	46	27	18	7	1.76
100287--100415	52	2.5	52	74	14	140	45	28	17	8	1.77
100411--100545	19	7.6	19	75	16	128	11	19	23	45	1.82
100433--100489	14	3.7	14	77	20	60	10	21	22	45	1.82
100416--100508	33	2.8	33	95	0	168	10	20	21	47	1.80
102440--102475	14	2.6	14	95	0	63	33	0	22	44	1.53
102582--102664	19	4.6	19	80	17	113	43	18	24	14	1.87
102693--102966	19	15.4	19	81	15	354	13	21	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102671--102938	52	5.0	52	93	4	455	14	22	16	46	1.83
102671--102938	109	2.5	105	91	6	459	14	22	16	46	1.83
105250--105274	12	2.1	12	100	0	50	0	28	0	72	0.86
105449--105495	24	2.0	24	87	8	69	38	21	14	25	1.92
106171--106560	20	19.5	20	84	5	457	20	18	25	35	1.95
108776--108818	6	7.2	6	100	0	86	32	0	51	16	1.45
109634--109664	2	16.0	2	93	6	55	51	0	0	48	1.00
110438--110477	16	2.5	16	95	0	71	37	15	5	42	1.68
118528--118567	21	1.9	21	89	0	62	10	25	40	25	1.86
125333--125387	24	2.3	24	87	0	74	36	5	16	41	1.71
126700--126757	22	2.6	22	94	0	107	20	29	18	31	1.97
126683--126760	22	3.5	22	87	0	102	19	32	17	30	1.95
127244--127281	13	3.0	13	88	3	60	34	13	7	44	1.72
134365--134394	3	10.0	3	100	0	60	0	0	33	66	0.92
136565--136724	81	2.0	79	90	2	248	18	22	21	37	1.94

Tables:   1

The End!