genome.fa.s2224.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002224.1 Hibiscus syriacus cultivar Beakdansim tig00004529_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150034

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210--241	17	1.9	17	93	6	57	59	21	12	6	1.55
304--361	16	3.7	16	86	2	73	55	18	13	12	1.69
601--643	12	3.7	12	81	12	54	25	23	20	30	1.99
1475--1534	24	2.5	24	89	5	86	56	15	11	16	1.67
1968--2031	13	5.3	12	72	20	53	43	0	0	56	0.99
1969--2072	54	1.9	54	90	7	167	46	0	0	53	1.00
2055--2131	35	2.3	34	77	11	86	35	0	1	63	1.03
1941--2098	56	2.8	57	76	16	150	40	0	1	58	1.06
2069--2133	28	2.2	29	79	17	73	32	0	1	66	1.01
2078--2128	21	2.4	21	83	3	66	31	0	0	68	0.90
2083--2136	10	5.7	10	77	18	62	29	0	0	70	0.88
2083--2141	9	6.3	9	77	16	50	30	0	1	67	1.00
2584--2643	31	1.9	31	96	0	111	43	8	6	41	1.61
4663--4747	42	2.0	42	100	0	170	34	16	2	47	1.60
11799--11828	15	2.0	15	93	0	51	13	16	6	63	1.50
13368--13428	30	2.0	30	100	0	122	27	0	29	42	1.56
23478--23615	71	1.9	71	89	0	213	34	18	13	34	1.90
25153--25209	29	2.0	29	89	0	87	17	15	26	40	1.90
26416--26488	23	3.2	23	92	0	119	35	17	8	38	1.80
26507--26551	22	2.0	22	86	0	63	37	11	11	40	1.76
26014--29289	490	6.7	489	92	1	5458	40	10	7	41	1.67
26913--26986	23	3.2	23	90	0	112	39	20	4	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27403--27475	23	3.2	23	90	0	110	39	20	5	34	1.76
27889--27961	23	3.2	23	82	0	83	39	17	4	38	1.69
26014--29289	973	3.3	976	94	1	5694	40	10	7	41	1.67
28376--28448	23	3.2	23	90	0	110	39	20	5	34	1.76
28866--28938	23	3.2	23	84	0	101	39	19	6	34	1.78
29730--29754	4	6.2	4	100	0	50	48	28	0	24	1.52
30946--31011	33	2.0	33	88	5	98	24	46	0	28	1.52
31045--31109	21	3.1	21	93	0	103	16	30	10	41	1.83
31822--31855	16	2.1	16	100	0	68	29	23	8	38	1.85
33512--33558	20	2.4	19	82	10	67	19	17	10	53	1.72
33298--33952	182	3.6	182	92	0	972	26	16	14	42	1.87
34385--34422	20	1.9	19	89	5	58	50	0	0	50	1.00
36706--36747	20	2.1	20	100	0	84	35	9	19	35	1.84
36843--36888	23	2.0	23	86	0	65	32	8	13	45	1.73
45019--45060	20	2.1	20	95	0	75	35	9	16	38	1.81
45141--45190	23	2.2	23	88	0	73	42	6	10	42	1.63
56457--56496	17	2.6	16	88	11	57	52	10	22	15	1.71
58868--58911	17	2.4	18	77	7	54	47	2	0	50	1.13
59156--59241	43	2.0	43	83	0	109	36	2	10	51	1.49
65772--65909	64	2.1	65	90	5	217	31	23	17	27	1.97
71716--71795	23	3.6	22	76	6	81	27	25	22	25	2.00
71716--71769	21	2.4	23	81	6	58	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72830--72873	2	22.0	2	100	0	88	50	0	0	50	1.00
73215--73338	32	3.9	32	76	7	101	33	20	17	27	1.96
78062--78186	32	3.9	32	77	7	112	32	21	18	28	1.97
81807--81958	65	2.4	64	84	4	191	30	23	17	28	1.97
81942--81978	19	2.0	18	89	5	56	21	35	18	24	1.96
84472--84499	10	2.8	10	100	0	56	39	10	0	50	1.37
87642--87677	16	2.2	16	90	0	54	27	2	2	66	1.19
88779--88822	21	2.1	21	82	0	52	6	38	18	36	1.77
89960--90068	45	2.4	46	84	4	141	28	22	17	32	1.96
91671--91830	65	2.5	65	90	5	245	33	22	16	28	1.95
93815--93860	22	2.2	22	88	7	69	30	15	19	34	1.93
94445--94515	31	2.3	31	90	0	106	54	16	7	21	1.65
97712--97743	2	16.0	2	100	0	64	50	0	0	50	1.00
98304--98395	30	3.0	30	88	4	123	47	6	11	33	1.66
98373--98430	22	2.6	22	81	10	73	62	0	3	34	1.12
100637--100777	41	3.5	40	84	7	169	19	17	21	40	1.91
100636--100839	20	9.8	21	63	13	82	20	19	22	37	1.94
100763--100818	23	2.5	23	85	5	71	21	19	28	30	1.98
100911--100947	6	6.2	6	100	0	74	35	48	16	0	1.46
101434--101485	5	9.6	5	93	2	59	0	19	51	28	1.47
101437--101489	6	9.5	6	93	6	78	0	16	52	30	1.44
101592--101881	41	6.9	41	76	11	248	36	24	20	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101656--101930	62	4.3	61	78	11	284	35	25	19	19	1.96
101691--101820	69	1.9	69	98	0	251	34	25	18	21	1.96
101791--101860	20	3.5	20	70	18	72	40	24	22	12	1.89
101810--101902	21	4.5	21	77	12	111	37	26	20	15	1.92
101767--101934	21	8.1	21	72	12	64	35	26	19	18	1.95
104084--104811	55	13.3	55	86	3	914	29	23	14	32	1.94
104826--105304	112	4.4	111	83	3	533	24	23	16	35	1.95
104826--105239	168	2.5	166	86	3	539	24	24	16	34	1.95
104870--105305	56	7.9	55	85	3	443	24	24	16	34	1.95
105634--105741	36	3.0	37	81	9	98	25	19	20	35	1.96
110729--112012	642	2.0	642	100	0	2568	33	21	19	25	1.97
116368--116430	21	2.9	21	85	4	81	20	36	25	17	1.94
116370--116451	21	3.8	21	75	15	69	21	37	24	15	1.93
121377--121505	55	2.3	55	90	2	206	21	21	13	43	1.86
125088--125128	15	2.8	15	78	14	50	63	12	0	24	1.28
127908--127944	7	5.0	7	87	12	56	40	2	2	54	1.29
127906--127962	23	2.4	24	91	5	98	42	3	3	50	1.36
128063--128105	22	2.0	22	85	0	59	58	2	0	39	1.11
128075--128114	17	2.3	19	87	12	59	57	0	0	42	0.98
132186--132242	17	3.5	17	72	13	66	56	1	3	38	1.27
133853--134097	122	1.9	123	93	6	420	45	3	2	48	1.33
133900--134107	64	3.3	63	70	19	200	47	3	2	46	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143709--143798	44	2.0	45	97	2	173	54	18	8	17	1.69
145067--145097	10	3.1	10	95	0	53	61	16	9	12	1.56
145034--145105	23	3.1	23	67	16	58	62	20	8	8	1.49
145361--145389	14	2.1	14	100	0	58	55	17	13	13	1.70
148851--148901	20	2.9	17	78	16	59	29	25	15	29	1.96
148830--148901	36	2.0	36	86	5	101	30	25	15	29	1.96
149343--149394	16	3.0	16	81	13	59	30	19	17	32	1.95
149343--149414	36	2.0	36	89	5	110	29	22	16	31	1.96
149343--149415	20	3.9	19	77	16	80	28	23	16	31	1.96
149757--149825	33	2.1	32	81	7	77	33	14	27	24	1.94

Tables:   1

The End!