genome.fa.s2225.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002225.1 Hibiscus syriacus cultivar Beakdansim tig00004530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121675

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2298--3222	196	4.8	196	80	11	988	34	14	13	38	1.85
2644--2977	178	1.9	178	88	5	514	35	15	12	36	1.86
2817--3235	194	2.2	195	85	6	548	35	12	12	39	1.82
3189--3230	21	2.0	21	86	4	59	19	11	23	45	1.83
4147--4355	65	3.2	63	80	9	215	30	23	19	26	1.98
4327--4375	19	2.6	19	84	9	57	24	28	20	26	1.99
7606--7675	18	3.7	18	80	14	86	24	31	24	20	1.98
9175--9329	64	2.4	63	81	10	165	29	16	20	33	1.95
13309--13351	20	2.2	20	86	0	59	37	16	11	34	1.85
24280--24310	12	2.6	12	100	0	62	19	45	0	35	1.51
27032--27126	40	2.4	40	82	3	111	22	17	14	45	1.85
27061--27122	20	3.1	20	97	0	115	22	17	14	45	1.85
33921--33989	21	3.3	21	81	4	77	37	7	10	44	1.66
34649--34722	20	3.7	20	74	3	85	37	20	20	21	1.94
34649--34742	41	2.3	40	87	1	125	35	21	20	23	1.96
34919--34980	18	3.0	22	69	26	62	27	38	16	17	1.91
35312--35359	20	2.4	20	89	0	69	35	29	18	16	1.93
35403--35451	20	2.5	20	86	0	62	18	16	26	38	1.91
35419--35473	20	2.8	20	91	0	83	10	16	23	49	1.77
35438--35481	20	2.2	20	87	0	61	13	13	20	52	1.74
37353--37496	20	7.5	20	84	9	192	40	20	19	19	1.92
37353--37526	94	1.9	93	90	1	276	41	20	19	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37543--37648	20	5.3	20	90	2	142	21	18	20	38	1.93
37543--37648	40	2.7	40	89	1	160	21	18	20	38	1.93
39592--39627	14	2.6	14	90	0	54	30	0	22	47	1.52
40582--40746	64	2.6	64	83	7	194	30	21	23	25	1.99
40630--40806	64	2.8	63	82	6	196	32	22	19	24	1.97
41114--41149	12	3.0	12	87	0	54	30	8	25	36	1.85
41294--41326	15	2.2	15	94	0	57	15	21	33	30	1.94
47488--47630	64	2.2	63	83	10	175	32	20	19	27	1.97
48002--48037	12	3.0	12	87	0	54	30	8	25	36	1.85
48182--48244	15	4.2	15	95	0	108	14	22	33	30	1.93
48886--48983	33	2.9	34	90	3	153	45	16	22	15	1.84
48993--49036	20	2.2	20	95	0	79	9	20	15	54	1.68
49000--49047	20	2.4	20	82	0	60	14	16	14	54	1.72
49052--49140	20	4.4	20	85	2	126	17	21	24	35	1.95
49128--49154	14	1.9	14	100	0	54	7	22	29	40	1.81
51567--51620	24	2.2	24	93	0	90	40	20	18	20	1.91
51567--51634	24	2.8	24	84	0	64	38	20	17	23	1.93
52464--52517	20	2.7	20	88	5	65	24	18	22	35	1.96
52474--52534	20	3.0	20	92	0	95	22	21	19	36	1.95
52484--52564	20	4.1	20	88	3	94	22	18	19	39	1.92
58738--58801	21	3.4	20	66	29	59	31	4	18	45	1.70
58736--58851	35	3.3	35	85	4	160	33	4	18	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59929--60925	498	2.0	499	92	1	1640	35	18	23	22	1.96
63829--63917	34	2.6	34	98	1	169	38	12	15	33	1.85
63890--63973	37	2.3	38	85	6	111	34	4	16	44	1.69
73708--73751	20	2.2	20	95	0	79	38	15	20	25	1.92
73719--73833	41	2.9	41	81	10	114	35	21	14	27	1.93
73657--73841	40	4.6	40	77	9	123	35	20	14	29	1.92
73760--73833	20	3.7	19	76	15	69	32	24	12	31	1.92
73723--73854	41	3.2	42	80	7	105	37	21	15	25	1.93
74664--74697	12	2.8	12	90	0	50	55	29	0	14	1.40
75051--75075	12	2.1	12	100	0	50	72	0	28	0	0.86
77876--77962	30	2.9	30	77	3	86	32	25	21	20	1.98
77934--78058	31	4.0	31	80	9	137	30	20	19	29	1.97
81963--82003	2	21.0	2	87	5	57	51	2	0	46	1.14
82820--82891	30	2.4	30	85	0	90	30	26	20	22	1.98
82878--83002	31	4.0	31	77	9	103	32	19	18	30	1.95
85163--85201	20	2.0	20	90	10	62	35	17	20	25	1.95
85230--85310	20	4.1	20	78	0	90	20	19	18	40	1.91
87119--87279	21	7.7	21	66	13	71	32	34	12	20	1.90
87394--87492	42	2.4	42	85	0	144	17	20	35	27	1.94
89341--89391	22	2.3	22	100	0	102	19	13	45	21	1.85
89820--89845	13	2.0	13	100	0	52	76	0	0	23	0.78
91202--91252	22	2.3	22	100	0	102	19	13	45	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91681--91706	13	2.0	13	100	0	52	76	0	0	23	0.78
93901--93974	34	2.2	34	82	4	87	60	1	2	35	1.19
97152--97215	31	2.1	30	91	2	101	20	21	15	42	1.89
97692--98502	6	136.2	6	95	4	1484	50	17	0	32	1.46
99064--99103	15	2.7	16	85	11	50	37	27	7	27	1.84
103916--103980	6	10.8	6	89	0	67	50	24	1	23	1.58
103916--103986	12	5.9	12	86	0	88	49	25	2	22	1.63
103941--104154	6	35.7	6	89	0	248	37	33	9	19	1.85
104172--104204	12	2.8	12	95	0	57	24	12	0	63	1.28
105485--105529	20	2.2	20	96	0	81	33	20	22	24	1.97
119819--119856	19	2.0	19	94	0	67	39	0	0	60	0.97
119812--119836	12	2.1	12	100	0	50	48	0	0	52	1.00
120141--120188	24	2.0	24	100	0	96	41	8	8	41	1.65
120823--120860	15	2.5	15	95	0	67	34	2	26	36	1.71

Tables:   1

The End!