genome.fa.s2228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002228.1 Hibiscus syriacus cultivar Beakdansim tig00004534_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64493

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5438--5484	14	3.4	14	90	0	67	31	23	2	42	1.66
12055--12098	9	4.7	9	88	8	52	81	2	11	4	0.92
20010--20052	21	2.0	22	86	13	63	32	11	4	51	1.59
25132--25201	34	2.1	32	89	5	104	21	31	15	31	1.95
25486--25527	21	2.0	21	95	0	75	26	28	21	23	1.99
25674--25733	29	2.0	31	90	6	97	41	16	6	35	1.75
26486--26518	14	2.4	14	94	0	57	30	21	3	45	1.67
37590--38089	203	2.4	203	82	6	564	23	10	19	46	1.81
38793--38868	36	2.1	36	97	0	143	43	14	10	31	1.79
43345--43374	15	2.0	15	100	0	60	13	46	26	13	1.80
43783--43864	36	2.2	36	95	2	146	43	14	10	30	1.80
46516--46679	85	1.9	85	81	4	197	33	18	17	30	1.94
46660--46707	13	3.6	13	86	5	69	35	16	18	29	1.93
47365--47419	25	2.2	24	81	12	67	36	10	3	49	1.56
48766--48810	19	2.4	19	84	0	63	20	24	31	24	1.98
48842--48993	29	5.2	29	86	4	189	32	3	19	44	1.67
56159--56196	17	2.2	18	95	4	69	18	50	21	10	1.76
56210--56354	29	5.0	29	89	5	213	33	2	18	45	1.64
56210--56350	28	4.9	28	88	7	194	33	2	17	46	1.63
57903--57940	2	19.0	2	100	0	76	50	0	0	50	1.00
58561--58663	35	2.8	34	76	16	91	71	4	4	18	1.22
58561--58614	18	3.1	16	80	15	63	74	3	1	20	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58714--58738	13	1.9	13	100	0	50	76	0	0	24	0.80
58951--59013	2	31.5	2	100	0	126	50	0	0	49	1.00
60695--61207	84	6.3	80	75	9	444	24	20	23	30	1.99
60638--61011	165	2.2	167	83	5	434	24	19	22	32	1.98
60772--61253	243	2.0	242	90	0	766	23	20	24	31	1.98

Tables:   1

The End!