Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002229.1 Hibiscus syriacus cultivar Beakdansim tig00004535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64238

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2630--2656
2
13.5
2
100
0
54
48
0
0
51
1.00
3576--3613
15
2.5
15
100
0
76
5
39
0
55
1.23
4342--4399
3
19.3
3
79
13
66
72
0
1
25
0.94
8027--8158
67
2.0
67
100
0
264
32
21
15
30
1.95
8466--8533
30
2.3
30
100
0
136
42
22
10
25
1.84
15726--15795
35
2.0
35
97
0
131
20
15
25
38
1.92
24220--24815
140
4.3
140
84
2
725
35
14
21
28
1.93
25056--25100
24
1.9
24
86
4
65
44
40
8
6
1.62
27759--28164
130
3.1
130
81
7
425
28
16
20
34
1.94
29428--29475
8
6.6
7
84
13
53
10
2
2
85
0.77
29427--29475
16
3.3
15
83
8
64
10
2
2
85
0.76
29412--29477
34
1.9
35
90
3
107
13
3
1
81
0.87
29412--29472
7
7.5
8
74
17
54
13
3
1
81
0.88
36584--36608
13
1.9
13
100
0
50
8
20
8
64
1.46
39134--39817
344
2.0
342
88
2
1023
36
17
12
33
1.88
42030--42076
11
3.8
12
78
21
53
72
2
6
19
1.17
47308--47400
32
2.9
32
77
15
93
20
23
35
20
1.96
47317--47432
32
3.7
30
73
15
90
21
23
34
20
1.97
49504--49610
31
3.5
30
91
5
169
26
25
13
35
1.92
51501--51569
31
2.3
31
90
7
106
33
11
26
28
1.91
53201--53241
17
2.3
18
83
4
57
70
0
0
29
0.87
54764--54846
3
27.7
3
100
0
166
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54881--54947
32
2.1
32
97
0
125
22
23
14
38
1.92
55359--55390
17
1.9
17
93
6
57
65
0
0
34
0.93
55460--55492
17
1.9
17
88
11
50
51
3
0
45
1.16
55509--55555
16
2.9
16
78
9
60
59
0
2
38
1.09

Tables:   1

The End!