Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000223.1 Hibiscus syriacus cultivar Beakdansim tig00000393_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126531

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1903--1961
25
2.4
25
94
0
109
23
13
11
50
1.74
2214--2260
16
2.8
17
75
18
53
48
8
8
34
1.64
8247--8294
25
1.9
25
91
0
78
43
14
4
37
1.65
12924--13086
88
1.9
88
86
2
238
33
23
19
23
1.97
14531--14578
18
2.5
19
80
19
64
56
0
27
16
1.41
14538--14573
17
2.1
18
94
5
65
55
0
27
16
1.42
26410--26451
21
1.9
21
85
9
57
21
2
4
71
1.16
29080--29135
24
2.3
24
96
0
103
46
8
7
37
1.63
36399--36449
14
3.8
13
80
10
50
7
13
5
72
1.26
36401--36460
25
2.5
24
84
15
79
6
13
5
75
1.18
39038--39070
2
16.5
2
100
0
66
0
48
0
51
1.00
39074--39098
2
12.5
2
100
0
50
48
0
0
52
1.00
40356--40386
4
7.8
4
100
0
62
74
0
0
25
0.82
45764--45807
12
3.6
12
81
3
52
2
15
2
79
0.93
58224--58274
20
2.5
20
80
0
57
29
19
21
29
1.98
65138--65191
25
2.2
25
89
0
81
27
33
1
37
1.68
71454--71580
62
2.0
62
93
0
218
31
11
14
43
1.80
71557--71642
31
2.8
30
84
6
111
38
6
11
43
1.68
75950--75983
16
2.1
16
94
0
59
32
8
26
32
1.87
96837--96861
10
2.5
10
100
0
50
44
8
16
32
1.76
104376--104417
20
2.1
20
100
0
84
26
26
19
28
1.98
105976--106138
58
2.8
59
81
10
174
39
4
21
33
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106034--106131
29
3.4
29
70
5
90
39
3
24
32
1.71
108154--108194
20
2.0
20
90
0
64
19
39
26
14
1.90
110926--111005
19
3.8
20
80
13
99
22
36
25
16
1.94
110957--111005
23
2.1
23
92
0
80
22
44
20
12
1.84
112012--112071
20
3.0
20
87
0
93
15
30
35
20
1.93
113515--113562
19
2.5
20
82
3
62
29
12
6
52
1.63
114853--114918
19
3.4
19
95
2
114
12
30
36
21
1.90
115373--115410
2
19.5
2
94
5
69
50
0
0
50
1.00
115432--115469
14
2.7
14
95
0
67
50
15
13
21
1.78
115620--115678
25
2.3
26
75
16
61
52
5
0
42
1.23
117727--117784
31
1.9
31
82
10
75
50
1
0
48
1.11
119852--119943
37
2.4
38
89
7
143
51
2
21
25
1.59
126010--126057
20
2.6
17
76
17
51
60
0
27
12
1.32

Tables:   1

The End!