genome.fa.s2230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002230.1 Hibiscus syriacus cultivar Beakdansim tig00004537_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63570

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6570--6739	84	2.0	82	88	2	250	57	12	1	28	1.46
10384--10561	44	4.1	43	78	4	160	30	15	24	30	1.95
10420--10581	87	1.9	86	81	3	200	32	16	22	28	1.96
19718--19986	82	3.3	81	81	5	290	28	23	17	29	1.97
19718--19927	41	5.1	41	72	15	132	28	24	17	29	1.97
19915--19995	41	2.0	41	85	2	108	27	23	19	29	1.98
20545--20626	25	3.3	25	96	0	155	24	25	20	29	1.99
21702--21893	82	2.3	82	83	6	237	38	20	10	30	1.86
21772--21893	42	3.0	41	67	14	97	39	21	9	30	1.84
22140--22196	11	5.0	11	74	6	51	5	5	47	42	1.48
22157--22262	23	4.6	23	86	2	97	2	8	44	44	1.49
22220--22277	23	2.5	23	94	0	98	5	5	39	50	1.47
23974--24025	23	2.3	23	96	0	95	17	15	34	32	1.91
27609--27820	114	1.9	114	88	2	327	37	8	16	38	1.78
27611--27872	114	2.3	114	84	3	312	38	8	14	38	1.76
27605--27829	57	3.9	57	87	0	297	36	7	17	38	1.78
28030--28485	67	6.8	67	88	1	664	31	15	24	28	1.95
28437--28724	81	3.6	80	84	5	368	36	12	22	28	1.91
28459--28754	158	1.9	158	84	6	402	37	11	22	28	1.89
28870--29000	45	3.0	45	78	10	137	42	10	21	25	1.85
29901--29935	2	17.5	2	100	0	70	48	0	0	51	1.00
31399--31462	4	15.8	4	80	15	69	20	3	1	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32361--32392	16	2.0	16	93	0	55	31	12	34	21	1.91
35198--35767	110	5.2	110	90	1	828	35	22	17	24	1.95
35735--36247	240	2.1	240	91	0	821	33	22	18	25	1.97
36076--36283	110	1.9	110	88	0	317	34	24	16	24	1.95
36685--36740	3	18.7	3	81	7	69	30	0	1	67	1.01
38231--38275	12	3.7	12	85	5	63	17	0	2	80	0.82
39541--39572	16	2.0	16	93	0	55	53	12	12	21	1.71
41747--41800	26	2.1	26	82	0	63	55	0	22	22	1.44
60922--60963	18	2.3	18	100	0	84	21	38	23	16	1.93

Tables:   1

The End!