genome.fa.s2234.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002234.1 Hibiscus syriacus cultivar Beakdansim tig00004544_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90336

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2749--2806	29	2.0	29	96	0	107	18	5	13	62	1.50
19648--19679	12	2.7	12	100	0	64	15	62	0	21	1.32
20091--20142	21	2.5	21	81	3	61	38	19	25	17	1.93
20705--20771	19	3.5	19	85	2	89	47	25	16	10	1.78
20767--20884	19	6.1	19	90	3	182	11	21	19	47	1.81
20767--20884	39	3.1	38	90	3	182	11	21	19	47	1.81
20772--20884	58	1.9	59	92	1	192	11	20	19	48	1.79
22887--23009	42	2.9	42	80	2	122	22	36	17	22	1.95
22943--23009	21	3.2	21	66	6	55	23	35	20	19	1.95
24367--24403	14	2.6	14	87	12	58	29	0	21	48	1.50
24546--24681	19	7.7	19	77	15	157	15	21	19	44	1.87
24535--24701	33	4.6	37	78	12	170	18	20	19	41	1.91
24543--24680	71	2.0	66	90	6	213	17	21	18	42	1.89
24550--24681	52	2.6	50	74	11	158	15	21	18	43	1.87
26972--26996	12	2.1	12	100	0	50	0	28	0	72	0.86
27171--27226	24	2.3	24	87	0	85	39	19	16	25	1.91
28261--28318	20	2.9	20	94	0	98	37	22	22	17	1.93
28337--28509	19	9.6	19	86	12	258	13	21	17	46	1.83
28361--28418	14	3.8	14	79	20	71	10	20	18	50	1.76
28337--28509	33	4.9	35	93	5	246	13	21	17	46	1.83
30502--30568	19	3.5	19	83	4	89	37	23	23	14	1.93
30557--30614	14	3.9	14	79	16	71	48	25	17	8	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30541--30619	32	2.4	33	95	2	142	46	24	18	10	1.80
30626--30721	19	5.6	17	72	21	78	11	19	22	45	1.82
30648--30705	14	3.9	14	79	16	71	8	17	25	48	1.75
30631--30721	32	2.8	33	94	3	166	10	18	23	47	1.80
30706--30759	20	2.8	19	86	5	72	16	24	24	35	1.95
30694--30759	19	3.4	19	81	4	78	15	22	24	37	1.92
31225--31269	18	2.5	18	85	0	63	11	15	46	26	1.79
32800--32843	22	2.0	22	95	0	79	18	15	45	20	1.85
33050--33127	41	1.9	41	89	0	120	23	15	23	38	1.92
33011--33124	20	5.7	20	77	10	90	25	16	24	33	1.96
33050--33145	41	2.3	41	82	3	113	21	18	22	36	1.95
34802--34845	21	2.0	22	82	4	54	56	0	0	43	0.99
37312--37336	5	5.0	5	100	0	50	20	0	0	80	0.72
39584--39614	2	15.5	2	100	0	62	48	0	0	51	1.00
51632--51690	4	14.8	4	89	0	91	52	0	20	27	1.47
51927--51977	21	2.4	21	96	0	93	25	9	3	60	1.45
52149--52181	16	2.0	17	88	5	50	18	21	30	30	1.97
52968--53014	21	2.2	21	96	0	85	34	6	31	27	1.82
54081--54466	167	2.3	166	86	3	549	25	17	22	33	1.96
54081--54468	83	4.6	83	85	1	533	25	17	22	33	1.96
55247--55284	20	1.9	20	100	0	76	10	26	36	26	1.89
56380--56510	31	4.2	31	77	6	131	30	19	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56476--56557	30	2.7	30	84	3	85	23	20	23	32	1.98
56504--56565	30	2.1	30	100	0	124	24	19	24	32	1.98
61080--61204	31	4.0	31	79	9	137	29	19	20	30	1.97
61201--61262	30	2.1	30	100	0	124	24	19	24	32	1.98
62205--62359	43	3.6	42	77	4	139	23	16	29	31	1.96
69485--69542	26	2.2	26	84	9	73	75	1	0	22	0.89
69484--69545	27	2.3	27	81	13	74	74	1	0	24	0.91
69506--69557	18	2.9	17	80	13	52	71	0	1	26	0.97
69950--70020	24	3.0	24	89	2	108	23	21	29	25	1.99
73660--73694	2	17.5	2	100	0	70	48	0	0	51	1.00
73775--73808	12	2.8	12	95	4	59	11	17	52	17	1.73
76673--76756	32	2.6	33	79	11	102	57	0	9	33	1.31
77107--77154	3	16.0	3	100	0	96	66	0	0	33	0.92
77485--77540	21	2.5	23	80	13	64	10	19	21	48	1.79

Tables:   1

The End!