genome.fa.s2235.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002235.1 Hibiscus syriacus cultivar Beakdansim tig00004545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63377

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197--301	2	51.5	2	68	17	56	46	1	5	45	1.37
210--291	18	4.4	19	75	20	84	46	2	4	46	1.37
197--291	36	2.6	36	80	12	104	47	2	5	45	1.37
203--292	20	4.8	20	76	19	95	46	2	4	46	1.35
336--390	10	5.8	10	81	8	53	45	7	9	38	1.64
375--479	32	3.2	33	80	14	87	43	1	3	50	1.31
401--445	22	1.9	25	86	13	69	44	0	4	51	1.21
396--1479	6	186.5	6	82	9	253	33	1	0	65	1.06
490--1397	12	78.6	12	85	13	1222	31	0	0	67	0.94
490--1397	18	53.7	17	84	12	1056	31	0	0	67	0.94
1359--1474	25	4.9	24	70	23	59	37	6	1	54	1.35
1406--1529	47	2.7	47	77	8	121	39	8	5	46	1.57
1476--1597	18	6.7	18	74	20	94	40	9	9	40	1.72
1484--1599	38	3.1	38	72	16	123	39	9	9	41	1.70
1658--1735	13	6.5	11	70	18	50	38	3	3	53	1.37
1654--1735	35	2.3	35	85	8	105	37	3	3	54	1.35
1679--1722	22	2.0	23	95	4	81	36	4	4	54	1.41
1668--1725	28	2.1	27	84	12	73	36	5	3	55	1.39
1658--1735	18	4.3	18	77	11	79	38	3	3	53	1.37
1660--1734	22	3.5	22	82	12	70	37	4	4	54	1.38
1771--1952	33	5.5	33	84	8	237	45	7	5	41	1.54
1816--2061	58	4.2	58	77	17	249	45	7	6	41	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1893--2072	51	3.4	51	86	10	261	46	7	6	40	1.56
1849--2098	109	2.3	108	78	15	296	45	7	5	42	1.54
1771--2073	98	3.0	98	82	11	292	45	7	5	41	1.57
1944--2061	33	3.8	33	74	17	135	44	7	7	40	1.62
1998--2096	51	1.9	51	80	8	112	46	7	5	41	1.53
4389--4429	20	2.0	20	95	0	73	19	26	21	31	1.97
4399--4439	20	2.0	20	85	0	55	26	26	17	29	1.97
4460--4503	20	2.2	20	95	0	79	9	13	13	63	1.51
4469--4513	20	2.2	20	84	0	54	15	13	13	57	1.65
5794--5827	16	2.1	16	88	0	50	50	0	2	47	1.16
5866--5902	15	2.4	16	86	13	51	32	2	5	59	1.34
6364--6611	130	1.9	130	92	0	415	35	12	15	36	1.86
7008--7083	35	2.2	35	92	0	125	35	1	23	39	1.63
7547--7622	35	2.2	35	92	0	125	39	23	1	35	1.63
8018--8265	130	1.9	130	94	0	433	36	14	12	35	1.85
8032--8296	130	2.0	129	82	4	318	40	13	13	33	1.83
8587--8649	28	2.3	27	78	8	63	46	1	3	49	1.27
8729--8762	16	2.0	18	88	11	54	64	5	2	26	1.30
10313--10367	4	13.8	4	96	0	101	0	25	0	74	0.82
22606--22632	7	3.9	7	100	0	54	55	14	14	14	1.70
23115--23153	3	13.0	3	100	0	78	33	0	0	66	0.92
25748--25774	4	6.8	4	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29229--29265	18	2.1	18	100	0	74	40	16	21	21	1.91
30459--30502	12	3.8	12	81	6	54	56	9	9	25	1.59
30782--30811	13	2.3	13	100	0	60	43	26	6	23	1.78
31622--31649	8	3.5	8	100	0	56	0	21	0	78	0.75
37468--37511	12	3.8	12	81	6	54	56	9	9	25	1.59
46685--46871	43	4.3	43	94	0	311	17	29	22	30	1.97
48147--48305	51	3.1	51	63	21	132	40	13	17	28	1.88
48100--48306	103	2.0	103	100	0	414	38	13	18	29	1.89
53879--53958	36	2.2	36	100	0	160	26	8	41	23	1.83
55065--55117	21	2.5	20	80	17	54	35	13	3	47	1.61
57002--57035	13	2.5	13	95	4	59	29	0	0	70	0.87
57944--57979	15	2.3	16	90	4	56	44	0	2	52	1.15
59671--59718	20	2.4	20	100	0	96	29	20	10	39	1.86

Tables:   1

The End!