genome.fa.s2236.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002236.1 Hibiscus syriacus cultivar Beakdansim tig00004546_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80378

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11645--11675	10	3.1	10	95	0	53	45	25	9	19	1.81
24503--24527	2	12.5	2	100	0	50	48	0	0	52	1.00
25328--25375	2	24.0	2	100	0	96	50	0	0	50	1.00
31236--31281	12	4.0	12	77	11	51	21	15	15	47	1.81
34026--34100	20	3.7	20	71	16	64	34	25	18	21	1.96
34066--34183	20	5.8	20	70	14	71	38	21	18	22	1.94
34129--34326	20	9.8	20	71	10	98	38	23	18	19	1.93
34147--34332	61	3.0	61	76	10	166	39	23	17	19	1.92
34190--34332	41	3.5	41	90	1	207	39	23	18	19	1.93
34129--34350	40	5.5	40	81	5	214	38	23	18	20	1.93
34190--34334	20	7.2	20	78	5	130	38	23	17	20	1.93
34355--34393	20	2.0	20	100	0	78	28	20	15	35	1.93
34357--34410	20	2.8	20	88	2	74	25	14	20	38	1.91
37821--37930	19	5.9	19	74	13	95	44	19	21	14	1.86
37926--38002	19	4.3	19	78	18	85	12	16	24	45	1.83
37941--38034	33	2.8	33	91	3	145	11	20	22	45	1.83
37936--38034	19	5.7	18	73	22	72	11	20	22	46	1.81
37984--38034	17	3.1	17	69	25	54	13	23	17	45	1.84
39512--39578	21	3.2	21	65	4	55	19	19	35	25	1.95
40031--40115	19	4.6	19	73	16	72	47	21	20	11	1.81
40073--40127	14	3.6	14	73	21	56	45	21	23	9	1.80
40055--40148	33	2.8	33	95	0	161	46	21	21	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40066--40146	19	4.8	18	66	25	61	49	18	20	11	1.78
40148--40229	19	4.3	19	90	3	121	12	17	25	45	1.83
40330--40709	94	4.1	94	94	1	647	47	18	12	21	1.82
42382--42489	33	2.9	39	81	9	102	45	20	22	12	1.83
42382--42494	20	6.1	19	78	13	110	44	20	23	12	1.85
42490--42534	19	2.4	19	88	0	63	8	17	24	48	1.75
42503--42568	33	2.0	34	84	3	89	12	21	21	45	1.84
42540--42590	20	2.5	20	83	0	66	17	13	17	50	1.77
43149--43382	20	11.6	20	74	11	165	19	17	24	38	1.93
43152--43382	40	5.8	40	80	5	234	19	17	24	38	1.93
43152--43321	41	4.2	40	88	1	243	18	18	24	37	1.94
43154--43302	81	1.9	79	91	2	244	18	18	24	38	1.92
43154--43382	81	2.8	81	78	7	207	19	17	24	38	1.93
43431--43485	20	2.8	19	70	8	56	20	14	29	36	1.92
44915--44965	27	1.9	26	84	11	68	62	3	15	17	1.47
47627--48269	84	7.7	84	82	2	720	25	18	22	34	1.96
47533--48260	168	4.4	167	83	3	837	25	18	21	33	1.96
48286--48506	121	1.8	121	86	0	316	28	19	22	29	1.98
48675--48818	43	3.3	43	90	0	207	22	18	30	29	1.97
48926--49036	43	2.6	41	83	8	132	22	14	32	30	1.94
49233--49363	64	2.0	64	88	2	192	32	9	20	37	1.86
49246--49389	64	2.3	64	85	3	184	29	13	22	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49622--49696	32	2.3	32	88	4	107	34	20	10	34	1.87
49622--49707	32	2.7	32	85	3	93	34	19	11	33	1.88
57528--57688	76	2.1	76	96	0	295	55	10	11	21	1.65
60914--60979	3	22.0	3	100	0	132	66	0	0	33	0.92
61862--61911	11	4.8	11	76	14	52	54	6	8	32	1.54
61853--61910	30	1.9	30	96	0	107	56	3	8	31	1.46
62653--62700	2	24.0	2	100	0	96	50	0	0	50	1.00
63226--63273	15	3.0	16	81	9	62	72	0	8	18	1.08
63638--63674	16	2.4	16	86	13	51	78	0	2	18	0.87
65460--65844	37	11.1	37	67	21	192	41	11	18	27	1.86
65469--65701	101	2.3	102	87	3	335	41	12	19	26	1.88
65527--65839	138	2.3	138	91	0	509	43	12	17	26	1.84
65765--65845	36	2.2	37	88	2	119	40	11	16	32	1.83
67165--67425	95	2.7	95	87	5	339	31	17	17	34	1.93
71508--71555	15	3.0	16	81	9	62	72	0	8	18	1.08
71518--71778	14	17.6	14	63	25	60	68	2	6	21	1.26
71508--71592	31	2.9	29	77	17	70	72	0	8	18	1.08
71672--71766	40	2.3	41	80	7	104	70	0	6	23	1.10
74116--74237	63	2.0	62	80	11	142	24	10	7	57	1.58
74743--74778	14	2.6	14	90	0	54	25	13	2	58	1.49
74771--74830	17	3.5	18	80	8	54	21	5	1	71	1.14
74776--74814	12	3.3	11	89	10	51	17	5	0	76	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74826--74865	19	2.1	19	86	9	55	27	2	5	65	1.27

Tables:   1

The End!