genome.fa.s2237.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002237.1 Hibiscus syriacus cultivar Beakdansim tig00004549_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146762

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279--342	23	2.8	22	88	9	92	21	21	26	29	1.99
270--347	23	3.3	23	82	5	86	25	17	23	33	1.96
4800--5045	131	1.9	128	80	9	288	40	11	15	32	1.83
12447--12493	18	2.6	18	80	6	51	40	2	2	55	1.24
13912--14037	50	2.5	51	74	15	120	15	34	27	22	1.94
14207--14249	22	2.0	21	86	13	61	30	2	2	65	1.18
14219--14255	18	2.1	17	90	5	56	29	2	2	64	1.21
16457--16529	26	3.0	24	69	27	64	27	6	4	61	1.40
20415--20457	22	2.0	22	86	9	61	30	4	4	60	1.37
24059--24091	2	16.5	2	93	0	57	48	0	3	48	1.17
24815--24842	2	14.0	2	100	0	56	50	0	0	50	1.00
27595--27640	21	2.1	21	84	4	56	34	2	17	45	1.61
38414--38461	23	2.1	23	84	0	60	35	14	16	33	1.89
38887--38949	23	2.7	23	92	0	99	38	20	4	36	1.74
38528--39582	430	2.5	429	97	0	1968	38	11	7	41	1.70
39095--39161	30	2.2	29	82	10	73	43	0	4	52	1.21
39317--39379	23	2.7	23	92	0	99	38	20	4	36	1.74
39801--39866	34	1.9	34	93	0	114	18	16	18	46	1.84
40140--40176	18	2.1	18	89	0	56	51	10	5	32	1.60
40599--40650	23	2.3	22	90	6	77	44	19	1	34	1.62
40609--40671	23	2.7	24	90	4	94	39	20	4	34	1.74
41015--41080	25	2.6	25	80	0	87	42	13	9	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43544--44032	182	2.7	182	94	1	854	34	17	14	33	1.90
48425--48450	13	2.0	13	100	0	52	46	0	23	30	1.53
61481--61598	61	1.9	61	86	6	168	45	4	16	33	1.67
61998--62042	24	1.9	23	86	13	65	51	2	0	46	1.13
65180--65228	2	24.5	2	100	0	98	48	0	0	51	1.00
65293--65340	24	2.0	25	87	4	71	64	0	2	33	1.05
66303--66331	2	15.0	2	92	7	51	48	0	0	51	1.00
67459--67492	17	2.0	17	100	0	68	29	17	17	35	1.93
67455--67491	9	4.3	9	83	10	51	24	21	16	37	1.93
83173--83244	35	2.1	35	97	2	137	45	5	9	38	1.60
90590--90644	10	5.6	10	81	12	69	70	5	3	20	1.22
90588--90645	28	2.1	27	84	9	80	70	5	3	20	1.21
90590--90644	19	2.8	21	83	13	80	70	5	3	20	1.22
90771--90800	14	2.1	14	93	0	51	63	0	0	36	0.95
102469--102499	13	2.3	14	94	5	55	45	0	0	54	0.99
102707--102770	23	2.8	23	76	9	60	53	0	3	43	1.16
103797--103859	24	2.6	24	78	14	58	49	3	0	47	1.17
103867--103917	23	2.2	23	89	6	77	52	1	0	45	1.12
103845--103945	26	3.8	26	72	10	69	49	0	0	49	1.07
103994--104062	19	3.6	19	69	21	54	50	1	2	44	1.25
103957--104042	27	3.1	27	71	18	70	47	1	2	48	1.22
108952--109026	2	37.5	2	94	5	134	49	1	0	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110856--110911	3	18.7	3	75	14	53	64	0	5	30	1.16
110856--110914	16	3.9	16	76	10	61	64	0	5	30	1.15
110856--110918	22	3.0	21	77	13	67	65	0	4	30	1.13
110950--111050	33	3.0	33	86	4	123	46	6	0	46	1.29
111029--111290	34	7.0	36	73	17	151	45	5	3	45	1.44
111029--111277	40	6.6	38	75	12	194	44	5	3	46	1.43
111058--111267	79	2.6	77	84	5	249	44	5	3	46	1.44
111826--113026	84	14.5	83	81	5	1238	23	19	26	29	1.98
111831--113026	165	7.2	165	86	2	1429	23	20	26	29	1.98
111907--113026	333	3.4	333	91	1	1651	23	19	26	30	1.98
116413--116457	19	2.4	19	96	3	83	68	8	11	11	1.39
118263--118322	23	2.5	24	78	10	70	71	3	10	15	1.25
118371--118401	16	1.9	16	93	0	53	80	0	16	3	0.83
119704--119765	3	20.7	3	77	12	65	64	0	4	30	1.14
119708--119768	19	3.3	19	79	6	72	63	0	4	31	1.15
119804--119955	34	4.5	32	75	19	123	48	5	0	45	1.26
119804--119955	35	4.6	32	74	14	114	48	5	0	45	1.26
119889--120119	39	6.0	38	75	12	188	45	4	2	47	1.36
119913--120120	78	2.7	76	84	7	240	44	4	2	48	1.37
120955--120999	2	23.5	2	82	8	58	46	2	0	51	1.13
121238--121277	2	20.0	2	94	0	71	47	0	0	52	1.00
121220--121286	14	4.9	14	81	5	66	50	0	1	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120963--121286	136	2.4	134	77	13	377	49	7	4	38	1.52
121545--121685	66	2.1	65	81	8	160	48	9	9	31	1.69
121702--121819	63	1.9	64	82	7	152	54	5	9	30	1.56
128208--128240	15	2.2	16	89	10	52	36	0	18	45	1.49
128324--128358	2	17.0	2	94	5	61	48	2	0	48	1.16
128578--128630	13	4.0	13	74	13	54	75	0	1	22	0.90
128578--128632	12	4.2	12	78	15	56	74	0	1	23	0.91
129859--129909	20	2.3	21	87	12	68	11	21	33	33	1.90
129936--129982	3	16.0	3	91	4	78	65	0	0	34	0.93
130753--130849	42	2.3	41	87	1	131	30	22	23	22	1.99
130533--131379	265	3.2	264	87	3	1206	32	19	17	30	1.95
132408--132515	54	2.0	54	83	0	135	27	25	11	36	1.90
134117--134178	10	6.1	10	75	14	56	3	20	0	75	0.94
137870--137903	17	2.1	16	88	5	50	76	0	8	14	1.01

Tables:   1

The End!