genome.fa.s2239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002239.1 Hibiscus syriacus cultivar Beakdansim tig00004553_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175568

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1801--1827	14	1.9	14	100	0	54	14	22	14	48	1.81
2919--2951	17	1.9	17	100	0	66	27	18	36	18	1.94
7136--7161	13	2.0	13	100	0	52	7	30	23	38	1.83
8786--9020	123	1.9	120	82	5	294	23	14	20	40	1.90
19951--20041	23	3.9	24	87	7	93	34	27	21	16	1.95
19962--20098	46	3.0	46	81	8	163	32	27	21	18	1.97
19979--20102	23	5.4	23	84	3	162	32	27	21	18	1.97
20265--20305	19	2.2	19	86	0	55	63	4	2	29	1.28
24207--24236	10	3.0	10	100	0	60	70	20	0	10	1.16
25184--25208	3	8.3	3	100	0	50	32	0	0	68	0.90
28751--28790	17	2.2	19	86	8	57	55	2	0	42	1.13
30023--30061	17	2.4	17	95	4	71	35	0	23	41	1.55
30030--30068	17	2.3	17	90	0	60	38	2	20	38	1.66
32696--32778	38	2.2	38	80	6	105	53	10	4	31	1.57
32757--32805	21	2.3	21	86	10	64	61	2	8	28	1.36
33055--33087	3	11.0	3	93	0	57	33	36	0	30	1.58
36585--36811	104	2.2	105	88	5	336	35	22	14	28	1.92
45366--45396	15	2.1	15	100	0	62	48	0	0	51	1.00
55022--55054	11	3.1	11	95	4	59	36	0	24	39	1.56
55158--55293	65	2.1	65	83	8	170	31	18	22	27	1.97
55168--55321	65	2.4	65	80	8	163	33	19	19	27	1.96
55930--56002	18	3.8	18	84	13	101	17	17	32	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55929--56004	40	1.9	40	97	0	143	18	19	31	30	1.96
56257--56317	2	30.5	2	100	0	122	49	0	0	50	1.00
62167--62217	20	2.5	20	90	0	75	25	25	25	23	2.00
62096--62281	85	2.2	86	75	12	184	30	20	22	25	1.98
62347--62389	21	2.0	23	81	9	54	41	2	16	39	1.61
62853--62925	18	3.9	18	78	18	78	19	20	32	27	1.97
62850--62909	18	3.0	20	85	11	79	20	21	30	28	1.98
62891--62925	16	2.2	16	94	0	61	20	20	34	25	1.96
62851--62936	40	2.2	39	83	8	111	20	19	30	29	1.97
63472--63511	16	2.6	16	92	4	64	47	7	22	22	1.76
69037--69107	18	3.9	18	92	0	106	19	18	32	29	1.96
72962--73006	23	2.0	23	81	0	54	26	2	4	66	1.22
73512--73614	33	3.2	32	82	10	97	34	0	3	61	1.15
75329--75376	21	2.3	21	85	0	60	25	39	12	22	1.89
75380--75452	21	3.5	21	87	7	103	19	34	26	20	1.96
75974--76070	33	2.9	34	85	3	133	55	4	3	37	1.35
75972--76077	34	3.2	33	82	8	133	54	4	2	37	1.36
76470--77224	128	5.9	128	97	0	1424	32	19	25	23	1.98
76470--77224	254	3.0	255	97	0	1413	32	19	25	23	1.98
76470--77224	382	2.0	383	97	0	1422	32	19	25	23	1.98
77295--77335	8	5.2	8	82	5	57	36	29	0	34	1.58
84004--84055	17	3.2	17	75	10	54	32	3	13	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84554--84590	7	5.3	7	100	0	74	13	43	0	43	1.44
84554--84599	21	2.2	21	88	0	65	10	50	0	39	1.38
85499--85605	3	37.0	3	76	7	78	55	1	0	42	1.17
85497--85605	15	7.6	14	72	15	89	55	1	0	42	1.17
89065--89119	20	2.8	19	78	10	58	40	1	14	43	1.56
89462--89652	60	3.2	59	75	6	177	31	23	3	41	1.71
90426--90463	17	2.2	17	90	9	60	78	0	10	10	0.95
92638--93110	37	13.6	35	69	17	148	42	12	17	27	1.85
92560--92759	102	2.0	102	85	2	276	40	13	20	27	1.89
92720--93111	36	11.2	36	72	16	306	42	11	17	29	1.84
92630--93111	138	3.5	138	93	1	779	42	12	17	27	1.85
93009--93136	37	3.5	35	82	12	145	42	10	17	29	1.83
95284--95469	95	2.0	95	86	2	266	31	17	18	32	1.94
99584--99631	2	24.0	2	100	0	96	50	0	0	50	1.00
102590--102625	17	2.2	17	90	5	56	47	0	0	52	1.00
106439--106475	2	19.0	2	94	5	67	51	0	0	48	1.00
111831--111886	28	2.0	28	89	0	85	26	17	10	44	1.82
113163--113214	15	3.5	15	78	0	68	19	42	15	23	1.89
113163--113234	30	2.4	30	95	0	126	19	38	16	25	1.92
113400--113433	15	2.3	15	94	0	59	29	41	5	23	1.78
115719--115759	18	2.2	19	95	4	75	24	4	24	46	1.72
122617--122691	29	2.6	29	95	0	132	16	34	26	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122742--122805	33	1.9	33	90	6	103	23	37	12	26	1.90
122893--122998	29	3.7	29	92	2	178	19	25	36	17	1.94
123386--123429	21	2.1	21	86	0	61	50	2	9	38	1.47
126354--126397	22	2.0	22	100	0	88	50	13	0	36	1.42
129461--129531	5	13.8	5	78	14	56	5	25	49	19	1.70
129454--129520	22	3.0	22	97	0	125	8	25	47	17	1.77
129465--129531	22	3.6	18	82	15	66	5	25	49	19	1.71
136784--136822	17	2.3	17	95	0	69	12	25	43	17	1.85
136820--136859	19	2.1	19	100	0	80	25	27	25	22	2.00
137763--137818	28	2.0	28	89	0	85	26	17	10	44	1.82
140460--140518	30	2.0	30	96	0	109	25	22	22	30	1.99
144383--144539	64	2.5	65	80	8	171	32	20	20	26	1.97
145397--145455	30	2.0	30	96	0	109	25	22	22	30	1.99
146367--146418	15	3.5	15	78	0	68	19	42	15	23	1.89
146367--146438	30	2.4	30	95	0	126	19	38	16	25	1.92
148971--149011	18	2.2	19	95	4	75	24	4	24	46	1.72
150631--150727	32	3.0	32	100	0	194	27	15	24	31	1.95
154696--154720	2	12.5	2	100	0	50	52	0	0	48	1.00
156251--156325	29	2.6	29	93	0	132	17	33	28	21	1.96
156961--157004	21	2.1	21	86	0	61	50	2	9	38	1.47
159931--159973	22	2.0	22	95	4	79	48	13	0	37	1.43
160977--161023	18	2.5	20	76	20	55	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160977--161039	20	3.2	20	78	17	62	61	0	1	36	1.05
160988--161041	18	2.9	18	80	17	58	57	0	1	40	1.09
161964--162010	21	2.2	22	84	3	60	36	2	2	59	1.21
162417--162469	20	2.5	20	77	17	63	45	0	0	54	0.99
162562--162609	23	2.2	20	78	10	51	39	2	2	56	1.23
162604--162684	19	4.3	19	72	20	64	48	1	2	48	1.23
162789--162835	22	2.1	23	84	4	60	53	2	2	42	1.25
162772--162841	32	2.2	34	82	10	85	51	1	2	44	1.25
164676--164765	39	2.3	39	84	3	110	17	24	20	37	1.93
169510--169589	24	3.3	24	77	10	76	32	23	21	22	1.98
171343--171386	19	2.3	19	84	7	54	15	13	9	61	1.56
172711--172747	2	18.5	2	100	0	74	48	0	0	51	1.00

Tables:   1

The End!