Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000224.1 Hibiscus syriacus cultivar Beakdansim tig00000394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65677

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1896--1947
16
3.2
16
97
0
95
44
15
0
40
1.46
3318--3357
10
4.1
10
90
6
64
32
30
0
37
1.58
3318--3357
19
2.0
20
90
4
64
32
30
0
37
1.58
3392--3432
18
2.3
18
91
4
66
29
4
2
63
1.28
5105--5161
18
3.2
18
84
0
78
22
22
22
31
1.98
8608--8648
18
2.3
18
91
0
64
29
19
17
34
1.94
11631--12113
170
2.8
168
86
5
617
49
16
12
20
1.78
12138--12164
2
13.5
2
100
0
54
51
48
0
0
1.00
13809--13849
21
2.0
21
85
0
55
41
9
7
41
1.66
14475--14571
49
2.0
48
85
2
131
29
28
22
18
1.97
14530--14708
59
3.0
58
77
8
164
32
25
19
22
1.97
17684--17712
15
1.9
15
100
0
58
48
24
0
27
1.51
18436--18486
2
26.0
2
92
4
86
50
0
0
49
1.00
27476--27500
6
4.2
6
100
0
50
16
16
16
52
1.76
30513--30566
20
2.6
21
88
5
74
35
27
14
22
1.93
30618--30670
20
2.7
20
77
13
56
33
16
22
26
1.96
34326--34356
16
1.9
16
93
0
53
29
35
29
6
1.82
34422--34488
2
33.5
2
100
0
134
49
0
0
50
1.00
34613--34671
5
11.8
5
100
0
118
40
18
0
40
1.51
35504--35838
165
2.0
167
95
4
615
35
22
4
37
1.74
51304--51372
18
3.8
18
86
0
102
27
31
21
18
1.97
52015--52066
19
2.7
19
96
0
95
23
30
15
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53589--53628
11
3.6
11
100
0
80
7
10
55
27
1.60
56420--56476
21
2.8
20
81
7
71
33
22
17
26
1.96
56425--56477
19
2.7
20
82
5
63
30
22
18
28
1.98
59444--59507
29
2.3
27
80
17
78
50
3
4
42
1.39
60245--60305
21
3.0
21
97
2
115
24
24
3
47
1.67
61253--61379
51
2.5
50
80
14
143
14
31
28
25
1.95

Tables:   1

The End!