Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002240.1 Hibiscus syriacus cultivar Beakdansim tig00004555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58877
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:2109 original size:17 final size:17
Alignment explanation
Indices: 2072--2104 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
2062 AATTTCTAAT
2072 TTTTGCGGTGAAAATTA
1 TTTTGCGGTGAAAATTA
2089 TTTTG-GGTG-AAATTA
1 TTTTGCGGTGAAAATTA
2104 T
1 T
2105 ATTTTATCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 4 0.25
17 5 0.31
ACGTcount: A:0.27, C:0.03, G:0.24, T:0.45
Consensus pattern (17 bp):
TTTTGCGGTGAAAATTA
Found at i:5060 original size:14 final size:14
Alignment explanation
Indices: 5041--5067 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
5031 TTTCTGTCTA
5041 TATGCAGAGATTTC
1 TATGCAGAGATTTC
5055 TATGCAGAGATTT
1 TATGCAGAGATTT
5068 ATTTGTAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (14 bp):
TATGCAGAGATTTC
Found at i:5299 original size:3 final size:3
Alignment explanation
Indices: 5291--5316 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
5281 AAATAGGGTT
5291 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
5317 ATAATTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:6708 original size:21 final size:20
Alignment explanation
Indices: 6682--6724 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
6672 GATGATGTTA
6682 TTTTTA-TATTATATTTATATT
1 TTTTTACTATT-TATTTAT-TT
6703 TTTTTACTATTTATTTATTT
1 TTTTTACTATTTATTTATTT
6723 TT
1 TT
6725 GTCACCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.19
21 13 0.62
22 4 0.19
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTACTATTTATTTATTT
Found at i:15105 original size:24 final size:25
Alignment explanation
Indices: 15077--15123 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
15067 AATTTCAAAT
15077 TCCCCT-TAAAA-ATTTATAAATTTA
1 TCCCCTCTAAAATA-TTATAAATTTA
15101 TCCCCTCTAAAATATTATAAATT
1 TCCCCTCTAAAATATTATAAATT
15124 CACCCCTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.29
25 14 0.67
26 1 0.05
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (25 bp):
TCCCCTCTAAAATATTATAAATTTA
Found at i:15118 original size:25 final size:24
Alignment explanation
Indices: 15077--15123 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 24
15067 AATTTCAAAT
15077 TCCCCTTAAAAATTTATAAATTTA
1 TCCCCTTAAAAATTTATAAATTTA
15101 TCCCCTCT-AAAATATTATAAATT
1 TCCCCT-TAAAAAT-TTATAAATT
15124 CACCCCTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (24 bp):
TCCCCTTAAAAATTTATAAATTTA
Found at i:15129 original size:24 final size:24
Alignment explanation
Indices: 15077--15130 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
15067 AATTTCAAAT
*
15077 TCCCCT-TAAAAATTTATAAATTTA
1 TCCCCTCT-AAAATTTATAAATTCA
15101 TCCCCTCTAAAATATTATAAATTCA
1 TCCCCTCTAAAAT-TTATAAATTCA
15126 -CCCCT
1 TCCCCT
15131 AATACAAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (24 bp):
TCCCCTCTAAAATTTATAAATTCA
Found at i:20570 original size:36 final size:36
Alignment explanation
Indices: 20297--20567 Score: 301
Period size: 36 Copynumber: 7.5 Consensus size: 36
20287 CTACACTCCT
*
20297 GATTCAAGTCGAACGGAATGAGGCATCGGCACTTCT
1 GATTCAAGTCGAACGGAATGAGGCATCGGCACTTCC
* *
20333 GATTCAAGTCGAACAGAATGAGGCATCGGCACTTTC
1 GATTCAAGTCGAACGGAATGAGGCATCGGCACTTCC
* * *
20369 GATTCAAGTC-AAAGAGAATGAGGCACCGACACTTCC
1 GATTCAAGTCGAACG-GAATGAGGCATCGGCACTTCC
* *
20405 GATTCAAGTCGAATGGAATGAGGCATCGGCACTTCT
1 GATTCAAGTCGAACGGAATGAGGCATCGGCACTTCC
* * * * **
20441 GATTCAATTCGAATGGAAGGAAGCATCGATACTTCC
1 GATTCAAGTCGAACGGAATGAGGCATCGGCACTTCC
* * * * *
20477 GATTCAAGTCGAATGGAATGAAGCATTGGCATTTTC
1 GATTCAAGTCGAACGGAATGAGGCATCGGCACTTCC
* **
20513 GATTCAAGTCGGAACGGAAGGAAACATCGGCACTTCC
1 GATTCAAGTC-GAACGGAATGAGGCATCGGCACTTCC
**
20550 GATTCAAGTTAAACGGAA
1 GATTCAAGTCGAACGGAA
20568 GGATATAGCG
Statistics
Matches: 199, Mismatches: 33, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
35 2 0.01
36 165 0.83
37 32 0.16
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (36 bp):
GATTCAAGTCGAACGGAATGAGGCATCGGCACTTCC
Found at i:21805 original size:257 final size:257
Alignment explanation
Indices: 21342--21855 Score: 992
Period size: 257 Copynumber: 2.0 Consensus size: 257
21332 ATGATAGGAT
21342 TTTGGGGTTTAAGATGAAATAAATGAGTATAGATTAGTTTAAATAGATATATAAGAGTTAAGAAT
1 TTTGGGGTTTAAGATGAAATAAATGAGTATAGATTAGTTTAAATAGATATATAAGAGTTAAGAAT
21407 AGAAAAAGGGATGAAATATGAAGAGTTGATAGAATAAAGAATGGATTTTTGTGCTCAAAGTATCA
66 AGAAAAAGGGATGAAATATGAAGAGTTGATAGAATAAAGAATGGATTTTTGTGCTCAAAGTATCA
*
21472 TTTCTGGGTTGTGTGCATCGATGCATCTTCAATGTGCATCGATGCACTCTCAAATAAATGAACAT
131 TTTCTGGGTTGTGTGCATCGATGCATCTTCAATGTGCATCAATGCACTCTCAAATAAATGAACAT
*
21537 CGATACATAAGGAGTGCATCGATGCACCTGCTTAAAATATAAACATCGAATAGGATTTATGC
196 CGATACATAAGGAGTGCATCGATGCACCTGCTTAAAATACAAACATCGAATAGGATTTATGC
21599 TTTGGGGTTTAAGATGAAATAAATGAGTATAGATTAGTTTAAATAGATATATAAGAGTTAAGAAT
1 TTTGGGGTTTAAGATGAAATAAATGAGTATAGATTAGTTTAAATAGATATATAAGAGTTAAGAAT
21664 AGAAAAAGGGATGAAATATGAAGAGTTGATAGAATAAAGAATGGATTTTTGTGCTCAAAGTATCA
66 AGAAAAAGGGATGAAATATGAAGAGTTGATAGAATAAAGAATGGATTTTTGTGCTCAAAGTATCA
*
21729 TTTCTGGGTTGTGTGCATTGATGCATCTTCAATGTGCATCAATGCACTCTCAAATAAATGAACAT
131 TTTCTGGGTTGTGTGCATCGATGCATCTTCAATGTGCATCAATGCACTCTCAAATAAATGAACAT
*
21794 CGATGCATAAGGAGTGCATCGATGCACCTGCTTAAAATACAAACATCGAATAGGATTTATGC
196 CGATACATAAGGAGTGCATCGATGCACCTGCTTAAAATACAAACATCGAATAGGATTTATGC
21856 ACCGATGCAT
Statistics
Matches: 253, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
257 253 1.00
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (257 bp):
TTTGGGGTTTAAGATGAAATAAATGAGTATAGATTAGTTTAAATAGATATATAAGAGTTAAGAAT
AGAAAAAGGGATGAAATATGAAGAGTTGATAGAATAAAGAATGGATTTTTGTGCTCAAAGTATCA
TTTCTGGGTTGTGTGCATCGATGCATCTTCAATGTGCATCAATGCACTCTCAAATAAATGAACAT
CGATACATAAGGAGTGCATCGATGCACCTGCTTAAAATACAAACATCGAATAGGATTTATGC
Found at i:23313 original size:19 final size:20
Alignment explanation
Indices: 23289--23329 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
23279 TCTGTTAGGC
* *
23289 TTGTAT-TAGACATTAGAAG
1 TTGTATATAAACAATAGAAG
23308 TTGTATATAAACAATAGAAG
1 TTGTATATAAACAATAGAAG
23328 TT
1 TT
23330 TTGTATTCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATATAAACAATAGAAG
Found at i:24457 original size:42 final size:42
Alignment explanation
Indices: 24386--24477 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
24376 TTATATATGG
* * * *
24386 ACTCGTTGGTGCGTGTGTGTCAGTTGTAAGGCTATAATAGTT
1 ACTCGTAGTTGCGTGTGTGTCAATCGTAAGGCTATAATAGTT
* *
24428 ACTTGTAGTTGCGTGTGTGTTAATCGTAAGGCTATAATAGTT
1 ACTCGTAGTTGCGTGTGTGTCAATCGTAAGGCTATAATAGTT
24470 ACTCGTAG
1 ACTCGTAG
24478 GTTAGCAAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.22, C:0.12, G:0.28, T:0.38
Consensus pattern (42 bp):
ACTCGTAGTTGCGTGTGTGTCAATCGTAAGGCTATAATAGTT
Found at i:25071 original size:12 final size:12
Alignment explanation
Indices: 25054--25078 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25044 TCTCATATAT
25054 ATATATACACAC
1 ATATATACACAC
25066 ATATATACACAC
1 ATATATACACAC
25078 A
1 A
25079 CAGTAGATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (12 bp):
ATATATACACAC
Found at i:26667 original size:20 final size:20
Alignment explanation
Indices: 26644--26798 Score: 104
Period size: 20 Copynumber: 7.6 Consensus size: 20
26634 ATTTGGACTA
26644 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
* *
26664 TCGCATTACGATAGT-CGACTA-
1 TCGCATTGCGAT-TTAC-A-TAT
26685 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
* *
26705 TCACATTGCGATTTATATAT
1 TCGCATTGCGATTTACATAT
* * *
26725 TCACATTGCGATAGTCCA-AGT
1 TCGCATTGCGAT-TTACATA-T
* * *
26746 TCGTATTGTGATAGT-CA-ACT
1 TCGCATTGCGAT-TTACATA-T
*
26766 ATCGCATTGTGATTTACATAT
1 -TCGCATTGCGATTTACATAT
26787 TCGCATTGCGAT
1 TCGCATTGCGAT
26799 AGTCCAAGTT
Statistics
Matches: 109, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
19 2 0.02
20 61 0.56
21 43 0.39
22 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.37
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:26684 original size:41 final size:41
Alignment explanation
Indices: 26639--26802 Score: 172
Period size: 41 Copynumber: 4.0 Consensus size: 41
26629 AACGAATTTG
*
26639 GACTATCGCATTGCGATTTACATATTCGCATTACGATAGTC
1 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTC
* * *
26680 GACTATCGCATTGCGATTTACATATTCACATTGCGAT-TTA
1 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTC
* * * * * *
26720 TA-TATTCACATTGCGATAGTCCA-AGTTCGTATTGTGATAGTC
1 GACTA-TCGCATTGCGAT-TTACATA-TTCGCATTGCGATAGTC
* *
26762 AACTATCGCATTGTGATTTACATATTCGCATTGCGATAGTC
1 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTC
26803 CAAGTTCACA
Statistics
Matches: 97, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
39 2 0.02
40 14 0.14
41 66 0.68
42 13 0.13
43 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (41 bp):
GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTC
Found at i:26758 original size:21 final size:21
Alignment explanation
Indices: 26728--26839 Score: 95
Period size: 21 Copynumber: 5.4 Consensus size: 21
26718 TATATATTCA
26728 CATTGCGATAGTCCAAGTTCG
1 CATTGCGATAGTCCAAGTTCG
* * *
26749 TATTGTGATAGT-CAACTATCG
1 CATTGCGATAGTCCAAGT-TCG
* * *
26770 CATTGTGAT-TTACATA-TTCG
1 CATTGCGATAGTCCA-AGTTCG
*
26790 CATTGCGATAGTCCAAGTTCA
1 CATTGCGATAGTCCAAGTTCG
* *
26811 CATTGCGATAGTCGAAATTCG
1 CATTGCGATAGTCCAAGTTCG
*
26832 CGTTGCGA
1 CATTGCGA
26840 ATCTGGACTG
Statistics
Matches: 73, Mismatches: 13, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
20 17 0.23
21 55 0.75
22 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (21 bp):
CATTGCGATAGTCCAAGTTCG
Found at i:29531 original size:22 final size:22
Alignment explanation
Indices: 29506--29552 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
29496 TAAATTATTT
29506 AAATTATTTACGTTTATGTGTA
1 AAATTATTTACGTTTATGTGTA
29528 AAATTATTTACGTTTATGTGTA
1 AAATTATTTACGTTTATGTGTA
29550 AAA
1 AAA
29553 AAATTATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (22 bp):
AAATTATTTACGTTTATGTGTA
Found at i:34986 original size:21 final size:19
Alignment explanation
Indices: 34930--34979 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
34920 AAGGTAAAAT
* * *
34930 GTGTATCGATATTGCTACA
1 GTGTACCGATACTGCTAAA
34949 GTGTACCGATACTGCTAAA
1 GTGTACCGATACTGCTAAA
34968 GTGTACCGATAC
1 GTGTACCGATAC
34980 ACTGCTACAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (19 bp):
GTGTACCGATACTGCTAAA
Found at i:36147 original size:19 final size:19
Alignment explanation
Indices: 36123--36159 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
36113 TTAAAATGAA
36123 TATCGATACACTGATTGTG
1 TATCGATACACTGATTGTG
*
36142 TATCGATACACTTATTGT
1 TATCGATACACTGATTGT
36160 ATTCGATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (19 bp):
TATCGATACACTGATTGTG
Found at i:36736 original size:2 final size:2
Alignment explanation
Indices: 36729--36814 Score: 172
Period size: 2 Copynumber: 43.0 Consensus size: 2
36719 CCTTATCCCC
36729 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36771 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36813 AT
1 AT
36815 TCTTATCTTA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 84 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38023 original size:21 final size:21
Alignment explanation
Indices: 37997--38314 Score: 140
Period size: 21 Copynumber: 14.6 Consensus size: 21
37987 GATTTACATA
37997 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
38018 TTCGCATTGC----G---AAG
1 TTCGCATTGCGATAGTCCAAG
*
38032 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
* **
38053 TTCGCGTTGCGATTTTCCAAATTCG
1 TTCGCATTGCGATAGTCC-AA---G
* *
38078 ACTATCGCATTGCGAT-TTACATA-
1 --T-TCGCATTGCGATAGTCCA-AG
*
38101 TTCGCATTGCGATAATCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
38122 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
* **
38143 TTCGCATTGCAATTTTCCAAATTCG
1 TTCGCATTGCGATAGTCC-AA---G
* *
38168 ACTATCGCATTGCGAT-TTACATA-
1 --T-TCGCATTGCGATAGTCCA-AG
38191 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
38212 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
* * **
38233 TTCGCGTTACGATTTTCCAAATTCG
1 TTCGCATTGCGATAGTCC-AA---G
* *
38258 ACTATCGCATTGCGAT-TTACATA-
1 --T-TCGCATTGCGATAGTCCA-AG
38281 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
38302 TTCGCGTTGCGAT
1 TTCGCATTGCGAT
38315 TTTTCCAAAT
Statistics
Matches: 230, Mismatches: 30, Indels: 74
0.69 0.09 0.22
Matches are distributed among these distances:
14 13 0.06
17 1 0.00
18 1 0.00
20 39 0.17
21 117 0.51
22 6 0.03
25 3 0.01
26 3 0.01
27 15 0.07
28 32 0.14
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:38034 original size:14 final size:14
Alignment explanation
Indices: 38015--38043 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
38005 GCGATAGTCC
38015 AAGTTCGCATTGCG
1 AAGTTCGCATTGCG
38029 AAGTTCGCATTGCG
1 AAGTTCGCATTGCG
38043 A
1 A
38044 TAGTCGAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (14 bp):
AAGTTCGCATTGCG
Found at i:38043 original size:35 final size:35
Alignment explanation
Indices: 37997--38064 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
37987 GATTTACATA
37997 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGAAG
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGAAG
* *
38032 TTCGCATTGCGATAGTCGAAGTTCGCGTTGCGA
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGA
38065 TTTTCCAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (35 bp):
TTCGCATTGCGATAGTCCAAGTTCGCATTGCGAAG
Found at i:38145 original size:90 final size:90
Alignment explanation
Indices: 38029--38405 Score: 535
Period size: 90 Copynumber: 4.2 Consensus size: 90
38019 TCGCATTGCG
38029 AAGTTCGCATTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCGACTATCGCATTGCGAT
1 AAGTTCGCATTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCGACTATCGCATTGCGAT
*
38094 TTACATATTCGCATTGCGATAATCC
66 TTACATATTCGCATTGCGATAGTCC
* *
38119 AAGTTCGCATTGCGATAGTCGAAGTTCGCATTGCAATTTTCCAAATTCGACTATCGCATTGCGAT
1 AAGTTCGCATTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCGACTATCGCATTGCGAT
38184 TTACATATTCGCATTGCGATAGTCC
66 TTACATATTCGCATTGCGATAGTCC
*
38209 AAGTTCGCATTGCGATAGTCGAAGTTCGCGTTACGATTTTCCAAATTCGACTATCGCATTGCGAT
1 AAGTTCGCATTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCGACTATCGCATTGCGAT
38274 TTACATATTCGCATTGCGATAGTCC
66 TTACATATTCGCATTGCGATAGTCC
* ** * * *** * * *
38299 AAGTTCGCGTTGCGATTTTTCCAAATTCGAC-TAT-CGCA-ACGCGAACTTCAACTATCGCATTG
1 AAGTTCGCATTGCGA-TAGTCGAAGTTCG-CGT-TGCG-ATTTTCCAAATTCGACTATCGCATTG
* *
38361 CGATTTACATATTCGCGTTGCGATAGTCG
62 CGATTTACATATTCGCATTGCGATAGTCC
*
38390 AAGTTCGCGTTGCGAT
1 AAGTTCGCATTGCGAT
38406 TTATTCCAAA
Statistics
Matches: 264, Mismatches: 19, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
90 189 0.72
91 72 0.27
92 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (90 bp):
AAGTTCGCATTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCGACTATCGCATTGCGAT
TTACATATTCGCATTGCGATAGTCC
Found at i:38376 original size:70 final size:70
Alignment explanation
Indices: 38212--38384 Score: 205
Period size: 70 Copynumber: 2.5 Consensus size: 70
38202 ATAGTCCAAG
* **
38212 TTCGCATTGCGATAGT-CGAAGTTCGCGTTACGA-TTTTCCAAATTCGACTATCGCATTGCGATT
1 TTCGCATTGCGATAGTAC-AAGTTCGCGTTGCGATTTTTCCAAATTCGACTATCGCAACGCGATT
*
38275 TACATA
65 AACATA
*
38281 TTCGCATTGCGATAGTCCAAGTTCGCGTTGCGATTTTTCCAAATTCGACTATCGCAACGCGAACT
1 TTCGCATTGCGATAGTACAAGTTCGCGTTGCGATTTTTCCAAATTCGACTATCGCAACGCG-A-T
38346 TCAAC-TA
64 T-AACATA
*
38353 -TCGCATTGCGAT-TTACATA-TTCGCGTTGCGAT
1 TTCGCATTGCGATAGTACA-AGTTCGCGTTGCGAT
38385 AGTCGAAGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
69 30 0.33
70 42 0.46
71 14 0.15
72 4 0.04
73 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (70 bp):
TTCGCATTGCGATAGTACAAGTTCGCGTTGCGATTTTTCCAAATTCGACTATCGCAACGCGATTA
ACATA
Found at i:38534 original size:6 final size:6
Alignment explanation
Indices: 38523--38565 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
38513 GACACGTATT
* *
38523 ACCACG ACCACG ATCACG ATCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
38566 GAACAGACGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.35, C:0.44, G:0.16, T:0.05
Consensus pattern (6 bp):
ACCACG
Found at i:39221 original size:21 final size:19
Alignment explanation
Indices: 39203--39513 Score: 163
Period size: 21 Copynumber: 15.0 Consensus size: 19
39193 AATTGCAACG
*
39203 CGAACTTCGACTATCGCAA
1 CGAACTTGGACTATCGCAA
39222 CGAACTTGGACTATCGCAA
1 CGAACTTGGACTATCGCAA
* * *
39241 TGAATTTGGAATAAATCGCAA
1 CGAACTTGGACT--ATCGCAA
* *
39262 CGAATTTGGAATAAATCGCAA
1 CGAACTTGGACT--ATCGCAA
* *
39283 CGCGTACTTCGACTATCGCAA
1 --CGAACTTGGACTATCGCAA
* * *
39304 CGAATTTGGAATAAATCACAA
1 CGAACTTGGACT--ATCGCAA
*
39325 CGCGAACTTCGACTATCGCAA
1 --CGAACTTGGACTATCGCAA
* *
39346 CGAACTTGGAACAAATCACAA
1 CGAACTTGG-AC-TATCGCAA
39367 CGCGAACTTGGACTATCGCAA
1 --CGAACTTGGACTATCGCAA
* *
39388 CGAATTTGGAATAAATCGCAA
1 CGAACTTGGACT--ATCGCAA
* *
39409 CGAATTTGGAATAAATCGCAA
1 CGAACTTGGACT--ATCGCAA
* *
39430 CGAATTTGGAATAAATCGCAA
1 CGAACTTGGACT--ATCGCAA
* *
39451 CGAATTTGGAATAAATCGCAA
1 CGAACTTGGACT--ATCGCAA
*
39472 CGCGAACTTCGACTATCGCAA
1 --CGAACTTGGACTATCGCAA
* *
39493 CGCGAACTTAGACTATTGCAA
1 --CGAACTTGGACTATCGCAA
39514 TATGAATATG
Statistics
Matches: 246, Mismatches: 30, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
19 53 0.22
20 2 0.01
21 154 0.63
22 2 0.01
23 35 0.14
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (19 bp):
CGAACTTGGACTATCGCAA
Found at i:39301 original size:42 final size:42
Alignment explanation
Indices: 39169--39452 Score: 337
Period size: 42 Copynumber: 6.8 Consensus size: 42
39159 TGCGATTTTG
* *
39169 GACTATCGCAACGAATTTGAAATAAATTGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* * * * *
39211 GACTATCGCAACGAACTTGGACT--ATCGCAA--TGAATTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* *
39249 GAATAAATCGCAACGAATTTGGAATAAATCGCAACGCGTACTTC
1 GACT--ATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
39293 GACTATCGCAACGAATTTGGAATAAATCACAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* * * *
39335 GACTATCGCAACGAACTTGGAACAAATCACAACGCGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* *
39377 GACTATCGCAACGAATTTGGAATAAATCGCAA--CGAATTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
39417 GAATAAATCGCAACGAATTTGGAATAAATCGCAACG
1 GACT--ATCGCAACGAATTTGGAATAAATCGCAACG
39453 AATTTGGAAT
Statistics
Matches: 207, Mismatches: 25, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
38 8 0.04
40 33 0.16
42 159 0.77
44 7 0.03
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:39489 original size:147 final size:146
Alignment explanation
Indices: 39222--39494 Score: 458
Period size: 147 Copynumber: 1.9 Consensus size: 146
39212 ACTATCGCAA
*
39222 CGAACTTGGACTATCGCAATGAATTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAACGCG
1 CGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAAC-CG
* *
39287 TACTTCGACTATCGCAACGAATTTGGAATAAATCACAACGCGAACTTCGACTATCGCAACGAACT
65 AACTTCGAATATCGCAACGAATTTGGAATAAATCACAACGCGAACTTCGACTATCGCAACGAACT
39352 TGGAACAAATCACAACG
130 TGGAACAAATCACAACG
39369 CGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAA-CGA
1 CGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAACCGA
* * *
39433 ATTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACG
66 ACTTCGAAT--ATCGCAACGAATTTGGAATAAATCACAACGCGAACTTCGACTATCGCAACG
39495 CGAACTTAGA
Statistics
Matches: 118, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
145 8 0.07
147 110 0.93
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (146 bp):
CGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAACCGA
ACTTCGAATATCGCAACGAATTTGGAATAAATCACAACGCGAACTTCGACTATCGCAACGAACTT
GGAACAAATCACAACG
Found at i:42275 original size:19 final size:21
Alignment explanation
Indices: 42236--42275 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
42226 ACCCCCAACC
42236 GCCTTCAATGCTGCAAAGTAA
1 GCCTTCAATGCTGCAAAGTAA
42257 GCCTTC-ATGCTGC-AAGTAA
1 GCCTTCAATGCTGCAAAGTAA
42276 TCTTTGATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 7 0.37
21 6 0.32
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (21 bp):
GCCTTCAATGCTGCAAAGTAA
Found at i:46196 original size:76 final size:74
Alignment explanation
Indices: 46090--46297 Score: 290
Period size: 76 Copynumber: 2.8 Consensus size: 74
46080 TTTTAAATAA
* * *
46090 TATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATATGTTCTAGTATTTTAATTAAGTTTTAG
1 TATATTTTATATTTGTTTTAGGTATTTTAGTTTAAATA-GTTTTAGTATTTTAATTAAGATTTAG
*
46155 GATATTATTTT
65 AATATTA-TTT
*
46166 TATATTTTAGATTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGATTTAG
1 TATATTTTATATTTGTTTTAGGTATTTTAGTTTAAATA-GTTTTAGTATTTTAATTAAGATTTAG
46231 AATATTATTT
65 AATATTATTT
* * * * *
46241 TAAATATTATTTTTGTTTTAGATATTTTAGTTTAAATAGTTTTAAGTGTTTTAATTA
1 TATATTTTATATTTGTTTTAGGTATTTTAGTTTAAATAGTTTT-AGTATTTTAATTA
46298 GAATTTAAGA
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
74 5 0.04
75 48 0.40
76 66 0.55
ACGTcount: A:0.29, C:0.01, G:0.12, T:0.58
Consensus pattern (74 bp):
TATATTTTATATTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAGTATTTTAATTAAGATTTAGA
ATATTATTT
Found at i:49985 original size:24 final size:26
Alignment explanation
Indices: 49941--49995 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
49931 TTTAAAATCC
49941 TTTT-TATTTTACTGCTATTATTTAT
1 TTTTATATTTTACTGCTATTATTTAT
*
49966 TTTTATATTTTCCT-CT-TTATTTAT
1 TTTTATATTTTACTGCTATTATTTAT
*
49990 TATTAT
1 TTTTAT
49996 CTATTTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 13 0.48
25 6 0.22
26 8 0.30
ACGTcount: A:0.20, C:0.09, G:0.02, T:0.69
Consensus pattern (26 bp):
TTTTATATTTTACTGCTATTATTTAT
Found at i:51302 original size:21 final size:20
Alignment explanation
Indices: 51278--51476 Score: 140
Period size: 21 Copynumber: 9.6 Consensus size: 20
51268 CATATTCGCA
51278 TTGCGA-TAGTCCAAGTTCGCG
1 TTGCGATTAGTCCAAGTT--CG
*
51299 TTGCGATTTATTCCAAGTTCG
1 TTGCGA-TTAGTCCAAGTTCG
* *
51320 TTGTGA-TAGTCGAAGTTCGCG
1 TTGCGATTAGTCCAAGTT--CG
* *
51341 TTGCGATTTATTCCAAATTCG
1 TTGCGA-TTAGTCCAAGTTCG
* *
51362 TTGCGATTTATTCCAAATTCG
1 TTGCGA-TTAGTCCAAGTTCG
51383 TTGCGA-TAGTCCAAGTTCGCG
1 TTGCGATTAGTCCAAGTT--CG
*
51404 TTGCGATTTATTCCAAGTTCG
1 TTGCGA-TTAGTCCAAGTTCG
*
51425 -TGCGA-TAGTCGAAGTTCG
1 TTGCGATTAGTCCAAGTTCG
* *
51443 CATTGCGATTTATTCCAAATTCG
1 --TTGCGA-TTAGTCCAAGTTCG
51466 TTGCGA-TAGTC
1 TTGCGATTAGTC
51477 AAAAATCGCA
Statistics
Matches: 146, Mismatches: 17, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
18 11 0.08
19 22 0.15
20 5 0.03
21 70 0.48
23 38 0.26
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.37
Consensus pattern (20 bp):
TTGCGATTAGTCCAAGTTCG
Found at i:51385 original size:42 final size:41
Alignment explanation
Indices: 51339--51476 Score: 167
Period size: 42 Copynumber: 3.3 Consensus size: 41
51329 TCGAAGTTCG
* *
51339 CGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATT
1 CGTTGCGA-TTAGTCCAAGTTCGTTGCGATTTATTCCAAATT
*
51381 CGTTGCGA-TAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTT
1 CGTTGCGATTAGTCCAAGTT--CGTTGCGATTTATTCCAAATT
*
51423 CG-TGCGA-TAGTCGAAGTTCGCATTGCGATTTATTCCAAATT
1 CGTTGCGATTAGTCCAAGTTCG--TTGCGATTTATTCCAAATT
51464 CGTTGCGA-TAGTC
1 CGTTGCGATTAGTC
51477 AAAAATCGCA
Statistics
Matches: 86, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
39 2 0.02
40 9 0.10
41 35 0.41
42 40 0.47
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37
Consensus pattern (41 bp):
CGTTGCGATTAGTCCAAGTTCGTTGCGATTTATTCCAAATT
Found at i:51425 original size:63 final size:63
Alignment explanation
Indices: 51287--51430 Score: 227
Period size: 63 Copynumber: 2.3 Consensus size: 63
51277 ATTGCGATAG
* * *
51287 TCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGTGATAGTCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTT--CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTAT
*
51352 TCCAAATTCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTAT
1 TCCAAGTTCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTAT
51415 TCCAAGTTCG-TGCGAT
1 TCCAAGTTCGTTGCGAT
51431 AGTCGAAGTT
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
62 6 0.08
63 61 0.82
65 7 0.09
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (63 bp):
TCCAAGTTCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTAT
Found at i:51441 original size:41 final size:42
Alignment explanation
Indices: 51360--51476 Score: 200
Period size: 41 Copynumber: 2.8 Consensus size: 42
51350 ATTCCAAATT
51360 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
* *
51402 CGTTGCGATTTATTCCAAGTTCG-TGCGATAGTCGAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
*
51443 CATTGCGATTTATTCCAAATTCGTTGCGATAGTC
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTC
51477 AAAAATCGCA
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
41 38 0.54
42 32 0.46
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (42 bp):
CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
Found at i:52226 original size:21 final size:20
Alignment explanation
Indices: 52174--52317 Score: 98
Period size: 21 Copynumber: 7.0 Consensus size: 20
52164 CGTTGCGATT
*
52174 TTGGACTATCGCAA-CG-AT
1 TTGGACTATCGCAAGCGAAC
*
52192 TTGGAATAATCGCAACGCGAAC
1 TTGGACT-ATCGCAA-GCGAAC
* *
52214 TTCGACTATCGCAA-CGAAT
1 TTGGACTATCGCAAGCGAAC
* *
52233 TTGGAATAAATCGCAACACGAAC
1 TTGGACT--ATCGCAA-GCGAAC
* *
52256 TTTGACTATCGCAA-CGAAT
1 TTGGACTATCGCAAGCGAAC
*
52275 TTGGAATAAATCGCAATGCGAAC
1 TTGGACT--ATCGCAA-GCGAAC
52298 TTGGACTATCGCAATGCGAA
1 TTGGACTATCGCAA-GCGAA
52318 TATGTAAATC
Statistics
Matches: 99, Mismatches: 15, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
18 6 0.06
19 25 0.25
21 43 0.43
22 6 0.06
23 19 0.19
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (20 bp):
TTGGACTATCGCAAGCGAAC
Found at i:52255 original size:42 final size:42
Alignment explanation
Indices: 52177--52445 Score: 232
Period size: 42 Copynumber: 6.3 Consensus size: 42
52167 TGCGATTTTG
52177 GACTATCGCAACG-ATTTGGAAT-AATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* *
52217 GACTATCGCAACGAATTTGGAATAAATCGCAACACGAACTTT
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* *
52259 GACTATCGCAACGAATTTGGAATAAATCGCAATGCGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* * * *
52301 GACTATCGCAATGCGAATATGTAAATCAAAAT-GCGATA-GTCAAAGTTC
1 GACTATCGCAA--CGAATTTG-GAAT--AAATCGC-A-ACG-CGAACTTC
52349 G-CGT-T-GCGATAGTCGAATTTGGAATAAATCGCAACGCGAACTTC
1 GAC-TATCGC-A-A--CGAATTTGGAATAAATCGCAACGCGAACTTC
* * * *
52393 GACTATTGCAATGCGAACTTGGACT--ATCGCAATGCGAACTTC
1 GACTATCGCAA--CGAATTTGGAATAAATCGCAACGCGAACTTC
52435 GACTATCGCAA
1 GACTATCGCAA
52446 TGCAAACTTC
Statistics
Matches: 189, Mismatches: 22, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
40 13 0.07
41 9 0.05
42 92 0.49
44 27 0.14
45 12 0.06
46 8 0.04
47 12 0.06
48 16 0.08
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:52403 original size:21 final size:21
Alignment explanation
Indices: 52376--52471 Score: 147
Period size: 21 Copynumber: 4.6 Consensus size: 21
52366 TTTGGAATAA
*
52376 ATCGCAACGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
* *
52397 ATTGCAATGCGAACTTGGACT
1 ATCGCAATGCGAACTTCGACT
52418 ATCGCAATGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
*
52439 ATCGCAATGCAAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
*
52460 ATCGCATTGCGA
1 ATCGCAATGCGA
52472 TTTACATATT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 67 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (21 bp):
ATCGCAATGCGAACTTCGACT
Found at i:52506 original size:21 final size:21
Alignment explanation
Indices: 52480--52554 Score: 114
Period size: 21 Copynumber: 3.6 Consensus size: 21
52470 GATTTACATA
*
52480 TTCGCATTGGGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
52501 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
* *
52522 TTCGCATTACGATAGTCAAAG
1 TTCGCATTGCGATAGTCCAAG
*
52543 TTCGCGTTGCGA
1 TTCGCATTGCGA
52555 ATCTGGAAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Done.