Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002241.1 Hibiscus syriacus cultivar Beakdansim tig00004559_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74687

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
349--382
13
2.6
13
85
0
50
50
0
17
32
1.47
442--590
60
2.5
60
92
1
237
22
16
20
40
1.91
442--604
31
5.5
31
83
7
194
22
17
19
41
1.91
3043--3165
31
4.0
31
91
0
183
21
17
23
38
1.93
7776--7804
12
2.3
13
94
5
51
0
37
6
55
1.27
8228--8296
23
3.0
23
82
0
93
33
24
24
17
1.96
8807--8857
2
25.5
2
100
0
102
49
0
0
50
1.00
12300--12327
14
2.0
14
100
0
56
50
7
0
42
1.30
13583--13693
54
2.1
54
94
0
195
14
15
17
53
1.74
20528--20562
17
2.1
17
88
0
52
42
17
5
34
1.73
20696--20758
22
2.9
22
76
11
58
57
1
0
41
1.08
20696--20766
39
1.9
38
83
13
96
56
1
0
42
1.08
31235--31272
14
2.6
15
79
8
51
68
0
0
31
0.90
36090--36141
3
17.7
3
88
11
81
69
0
0
30
0.89
36473--36639
84
2.0
84
85
0
226
22
20
22
34
1.97
36768--36824
18
3.2
18
72
22
66
38
12
22
26
1.89
36770--36826
17
3.3
17
73
22
64
36
14
21
28
1.92
36741--37048
36
8.9
34
79
13
290
39
14
19
26
1.90
36750--37061
137
2.2
137
83
7
389
39
14
19
26
1.90
36841--37026
100
1.9
100
87
1
273
40
14
18
26
1.89
38829--38866
12
3.5
11
86
10
51
7
7
5
78
1.07
38839--38867
12
2.4
12
100
0
58
6
6
6
79
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38876--38921
11
3.8
12
86
11
51
2
17
2
78
0.96
41780--41813
5
6.4
5
96
3
50
76
0
0
23
0.79
42827--42852
2
13.0
2
100
0
52
50
0
0
50
1.00
45172--45212
18
2.3
18
91
4
66
9
4
4
80
1.00
58440--58510
20
3.5
20
79
7
81
30
14
25
29
1.94
58473--58689
113
1.9
113
81
1
265
34
12
20
32
1.90
58677--58741
20
3.3
19
81
10
67
32
13
20
33
1.91
58686--58758
20
3.7
20
80
10
78
27
15
23
34
1.94
66187--66225
19
2.1
19
90
0
60
53
2
5
38
1.37
68883--68917
16
2.4
14
90
9
52
37
0
2
60
1.12
70293--70379
39
2.2
39
87
0
120
19
27
25
27
1.99
70729--70779
26
2.1
24
85
10
68
17
9
23
49
1.77
73456--73571
43
2.7
43
78
5
144
28
11
20
39
1.87

Tables:   1

The End!