genome.fa.s2242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002242.1 Hibiscus syriacus cultivar Beakdansim tig00004560_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87940

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124--182	21	2.8	21	84	0	82	23	20	27	28	1.99
4412--4443	16	2.0	16	100	0	64	18	6	31	43	1.75
6712--6757	18	2.6	18	96	3	85	30	21	19	28	1.98
6654--6822	83	2.0	82	86	7	236	28	18	23	28	1.98
6729--6854	65	1.9	65	81	9	150	27	17	21	33	1.96
6837--6892	20	2.8	20	83	0	76	19	14	30	35	1.91
15430--15481	19	2.7	19	100	0	104	17	17	34	30	1.93
17030--17109	21	3.8	21	96	0	142	22	21	30	26	1.99
18340--18433	49	1.9	48	86	2	134	27	8	6	57	1.53
19142--19198	20	2.8	20	77	15	64	28	28	8	35	1.87
19233--19289	20	2.8	19	75	15	53	36	17	10	35	1.84
21511--21551	21	2.0	20	86	13	57	26	17	4	51	1.65
24670--24729	30	2.0	31	86	3	86	25	16	16	41	1.89
26341--26380	13	3.1	13	81	0	53	15	27	2	55	1.53
27276--27303	3	9.3	3	100	0	56	67	0	0	32	0.91
27305--27331	3	9.0	3	100	0	54	33	0	0	66	0.92
28176--28214	17	2.3	17	95	0	69	51	20	5	23	1.67
44413--44497	25	3.4	24	68	22	59	58	0	1	40	1.05
45360--45396	18	2.0	19	89	5	58	37	0	0	62	0.96
47981--48065	28	3.1	28	94	1	145	51	12	15	20	1.75
49430--49510	41	2.0	41	90	0	126	34	6	6	53	1.51
49649--49815	43	3.9	43	85	3	219	35	18	18	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53793--53911	60	2.0	60	98	0	229	20	26	16	36	1.93
54778--54820	22	2.0	22	86	4	61	37	27	16	18	1.92
59158--59232	29	2.6	29	86	2	87	30	26	12	30	1.92
59494--59534	10	4.1	10	84	12	57	31	29	0	39	1.57
59657--59877	110	2.0	111	94	0	390	35	8	11	45	1.70
61374--61403	15	2.0	15	100	0	60	20	60	20	0	1.37
61400--61439	18	2.2	18	90	0	62	27	27	17	27	1.98
64833--64953	51	2.4	51	98	0	233	26	24	23	24	2.00
64965--65088	51	2.4	50	80	6	124	20	31	30	16	1.95
68251--68275	12	2.1	12	100	0	50	52	0	16	32	1.44
68263--68339	40	1.9	40	91	0	127	51	1	12	33	1.48
68656--68685	13	2.3	13	94	0	51	43	10	16	30	1.81
73066--73105	20	2.0	21	85	14	57	42	5	7	45	1.54
73275--73481	65	3.2	63	82	7	220	31	24	16	27	1.96
81557--81596	20	2.0	21	85	14	57	42	5	7	45	1.54
81766--81964	65	3.2	63	78	13	189	31	24	16	27	1.96
81848--81956	57	1.9	57	90	1	175	31	24	15	28	1.96
85095--85571	183	2.6	181	91	1	760	42	14	16	26	1.86
86621--87192	197	2.9	192	79	9	541	38	14	16	30	1.88
87284--87333	23	2.2	23	92	0	82	32	22	8	38	1.83

Tables:   1

The End!