Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002243.1 Hibiscus syriacus cultivar Beakdansim tig00004561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60076

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2273--2373
41
2.4
43
85
5
134
25
12
23
37
1.91
9189--9232
17
2.6
17
81
0
52
59
0
0
40
0.98
17097--17132
17
2.1
17
89
0
54
19
8
8
63
1.47
21138--21233
14
6.9
14
72
21
58
47
6
2
43
1.40
21105--21232
35
3.7
35
91
5
201
50
3
3
42
1.36
21677--21714
13
2.9
13
96
0
67
26
21
47
5
1.71
27012--27097
28
3.1
27
83
3
100
63
12
8
15
1.50
27036--27097
14
4.4
14
87
0
88
67
12
4
14
1.38
28263--28348
23
3.7
23
77
0
91
19
20
23
36
1.95
28515--28552
2
19.0
2
100
0
76
0
0
50
50
1.00
34069--34313
35
7.0
35
84
1
312
37
18
20
22
1.94
34876--34922
18
2.5
19
76
20
53
46
4
0
48
1.21
36071--36102
5
6.6
5
92
7
57
18
0
0
81
0.70
36072--36102
14
2.2
14
100
0
62
19
0
0
80
0.71
37771--37816
19
2.4
19
96
0
83
10
13
10
65
1.48
41271--41999
164
4.4
165
86
2
926
30
24
20
24
1.99
41271--41967
329
2.1
330
86
2
943
29
25
20
24
1.99
42538--42584
18
2.5
19
76
20
53
46
4
0
48
1.21
43734--43760
14
1.9
14
100
0
54
18
0
0
81
0.69
44656--44698
16
2.8
16
86
6
63
72
2
0
25
0.97
45789--46389
182
3.3
183
88
3
899
44
13
15
26
1.84
48376--48429
24
2.4
23
85
14
69
48
0
5
46
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48415--48444
12
2.5
12
100
0
60
53
0
0
46
1.00
48670--48705
18
2.1
17
89
5
54
33
8
52
5
1.55
48884--49010
66
1.9
66
80
3
148
30
3
40
24
1.73
50731--50965
66
3.6
66
95
0
425
32
5
22
39
1.76
50924--51061
48
2.9
48
94
1
233
36
2
26
34
1.69
51582--52951
201
6.8
200
85
3
1754
38
14
14
32
1.87
51582--52948
400
3.4
398
87
3
1863
38
14
14
32
1.87
53251--53281
15
2.0
16
93
6
55
32
38
3
25
1.72
53271--53322
18
2.9
17
82
5
59
26
38
1
32
1.68
56249--56279
3
10.3
3
92
0
53
64
0
3
32
1.09
56248--56277
15
2.0
15
100
0
60
60
0
6
33
1.23

Tables:   1

The End!