genome.fa.s2244.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002244.1 Hibiscus syriacus cultivar Beakdansim tig00004562_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122092

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2203--2238	20	1.9	20	88	11	58	33	0	0	66	0.92
2185--2238	18	2.9	18	83	10	56	33	1	0	64	1.04
10746--10808	32	2.0	32	100	0	126	28	26	6	38	1.81
11575--11632	28	2.0	29	83	9	75	50	0	12	37	1.40
19007--19065	13	4.5	13	77	10	50	23	0	38	37	1.55
20572--20603	7	4.6	7	100	0	64	28	0	43	28	1.55
21988--22083	40	2.4	40	92	0	138	42	18	17	20	1.89
21968--22083	20	5.8	20	73	8	94	43	19	18	18	1.89
22086--22254	84	2.0	84	90	0	266	31	21	17	30	1.96
23412--23453	18	2.4	18	80	7	52	73	0	0	26	0.83
27597--27950	177	2.0	179	87	5	522	43	10	12	33	1.77
28122--28178	22	2.5	23	78	10	64	54	1	0	43	1.10
28620--28661	13	3.3	13	83	3	50	80	2	11	4	0.95
28632--28680	21	2.3	21	79	10	55	79	6	6	8	1.05
30862--30901	17	2.4	16	87	4	53	62	2	0	35	1.09
32391--32434	6	7.3	6	100	0	88	15	0	65	18	1.27
36992--37128	59	2.3	58	78	12	136	37	10	16	35	1.83
37536--37598	22	2.9	22	95	0	108	46	7	25	20	1.78
42510--42881	156	2.4	158	88	2	545	47	5	18	28	1.69
48814--48869	16	3.4	17	83	11	64	55	0	1	42	1.10
58632--58671	3	13.3	3	94	0	53	0	32	7	60	1.25
59312--59356	20	2.1	22	84	8	58	24	13	15	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63619--63711	21	4.6	20	78	4	96	38	18	24	18	1.92
63616--63711	41	2.3	41	98	0	183	39	17	23	18	1.92
63619--63711	20	4.6	20	78	4	96	38	18	24	18	1.92
63700--63794	20	4.7	20	77	2	82	35	24	16	23	1.95
63697--63774	41	1.9	41	83	0	102	41	21	15	21	1.90
65603--65647	18	2.5	18	85	0	63	26	42	15	15	1.87
66120--66186	20	3.4	20	81	2	73	38	23	22	14	1.92
66175--66264	14	5.9	14	73	19	81	47	25	18	7	1.75
66159--66269	32	3.4	32	94	1	195	46	24	19	9	1.78
66276--66429	19	8.6	19	73	14	105	13	20	23	42	1.87
66298--66355	14	3.9	14	77	16	62	10	17	24	48	1.78
66281--66371	32	2.8	33	93	3	157	12	18	21	47	1.81
66356--66410	20	2.8	19	89	5	83	16	25	23	34	1.95
68278--68313	14	2.6	14	90	0	54	30	0	22	47	1.52
68420--68496	14	4.7	15	74	22	59	45	19	22	12	1.84
68430--68496	18	3.8	19	81	18	92	46	17	22	13	1.83
70007--70073	21	3.2	21	68	4	55	19	20	35	23	1.95
70007--70129	42	2.9	41	80	7	113	22	17	36	22	1.95
72127--72311	19	10.1	19	77	14	174	43	22	22	12	1.86
72127--72311	33	5.1	38	81	10	174	43	22	22	12	1.86
72307--72350	18	2.4	19	92	3	72	9	15	27	47	1.76
72903--72996	20	4.7	20	77	2	80	23	17	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72985--73080	41	2.3	41	98	0	147	18	23	17	39	1.92
72985--73077	20	4.6	20	78	4	96	18	24	18	38	1.92
76279--76321	2	22.0	2	95	4	79	51	0	0	48	1.00
78459--78500	21	2.0	21	85	0	57	50	2	0	47	1.14
78539--78567	2	14.5	2	100	0	58	48	0	0	51	1.00
80341--80371	2	15.5	2	100	0	62	48	0	0	51	1.00
89746--89792	21	2.2	21	77	7	51	44	2	17	36	1.60
93184--93224	20	2.0	20	86	9	57	41	2	2	53	1.27
93600--93646	22	2.1	23	84	4	60	53	6	0	40	1.27
96661--96738	31	2.5	31	89	0	120	39	16	11	32	1.85
97183--97368	85	2.2	85	97	1	345	39	4	15	39	1.69
98608--98641	16	2.1	16	100	0	68	44	0	0	55	0.99
98571--98662	39	2.4	39	76	10	91	46	0	1	52	1.07
102722--102879	53	3.0	52	97	2	298	37	2	24	34	1.69
105840--106397	291	1.9	290	86	3	791	27	16	22	33	1.95
110491--110601	29	3.8	29	95	1	186	19	16	14	49	1.79
112627--112653	3	9.0	3	100	0	54	0	33	0	66	0.92
117245--118347	297	3.7	302	79	8	1134	35	21	16	27	1.94
120375--120414	2	20.5	2	94	5	73	50	0	0	50	1.00
120794--120886	21	4.6	20	78	4	96	38	18	24	18	1.92
120791--120886	41	2.3	41	98	0	183	39	17	23	18	1.92
120794--120886	20	4.6	20	78	4	96	38	18	24	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120813--120946	41	3.3	41	81	7	123	37	20	21	20	1.95
120875--120968	20	4.7	20	82	0	98	34	24	18	23	1.96
120872--120948	40	1.9	40	86	0	109	38	22	16	22	1.93
121154--121197	22	2.0	22	95	0	79	20	45	15	18	1.85

Tables:   1

The End!