genome.fa.s2245.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002245.1 Hibiscus syriacus cultivar Beakdansim tig00004563_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87417

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2490--2547	29	2.0	29	96	0	107	15	25	10	48	1.77
2571--2598	3	9.3	3	100	0	56	32	35	0	32	1.58
11540--11594	21	2.6	21	77	8	67	27	23	14	34	1.94
11584--11635	21	2.5	21	87	3	70	38	17	23	21	1.93
11624--11713	20	4.4	20	82	8	101	31	27	18	22	1.97
11666--11722	20	2.8	20	94	0	96	24	28	21	26	1.99
11601--11731	20	6.4	20	79	4	84	35	23	19	22	1.96
11915--11981	34	2.0	34	84	0	89	40	23	22	13	1.89
13586--13678	42	2.2	42	90	3	143	21	16	41	20	1.90
13616--13678	21	3.0	21	72	9	74	22	15	41	20	1.90
14042--14134	20	4.7	20	83	4	89	40	23	21	13	1.89
14022--14134	40	2.8	40	78	2	102	39	24	19	15	1.91
14101--14161	19	3.5	19	74	21	78	45	19	19	14	1.85
14117--14175	14	3.9	14	72	20	55	49	22	16	11	1.78
14101--14180	33	2.4	33	95	0	142	47	21	18	12	1.81
14187--14270	19	4.6	19	75	15	79	15	22	19	42	1.88
14235--14278	20	2.2	20	92	4	72	20	25	18	36	1.95
14828--14875	18	2.7	18	93	0	87	14	12	45	27	1.81
15205--15270	20	3.3	20	95	0	123	25	18	30	25	1.98
15322--15383	21	3.0	20	79	9	70	33	17	27	20	1.96
15551--15575	3	8.3	3	100	0	50	32	0	0	68	0.90
26153--26213	30	2.1	29	81	9	70	37	4	3	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26147--26195	23	2.1	23	84	0	62	36	4	0	59	1.17
26478--26565	2	44.0	2	100	0	176	50	0	0	50	1.00
30907--30940	17	2.0	17	94	0	59	70	8	0	20	1.13
30934--31039	51	2.1	50	82	7	124	64	9	0	25	1.30
33263--33313	15	3.5	15	75	24	63	31	0	5	62	1.19
33258--33317	29	2.1	28	96	3	111	28	0	6	65	1.18
35882--35919	15	2.5	15	100	0	76	47	13	10	28	1.76
37106--37150	21	2.1	21	87	0	63	28	17	24	28	1.97
41220--41251	11	2.9	11	100	0	64	62	9	0	28	1.26
44993--45069	37	2.1	37	100	0	154	28	27	19	24	1.99
51758--51831	23	3.2	23	80	0	85	32	21	24	21	1.98
51903--52020	57	2.0	58	83	6	150	34	17	6	40	1.76
52630--52720	43	2.1	43	100	0	182	30	32	2	34	1.70
56771--56838	3	22.7	3	100	0	136	32	0	0	67	0.91
57207--57253	19	2.5	20	93	6	80	34	34	14	17	1.90
61356--61434	35	2.3	35	95	0	140	41	3	43	11	1.59
63348--63424	29	2.6	30	87	2	102	45	6	9	38	1.62
63756--63858	25	3.8	26	73	12	84	47	0	1	49	1.19
63756--63856	27	3.8	25	74	13	78	47	0	1	49	1.19
63756--63845	18	5.1	18	68	11	60	48	0	1	50	1.08
63872--63921	14	3.6	14	83	0	73	58	0	2	40	1.10
63879--63936	17	3.8	17	72	25	65	53	0	3	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63868--63939	28	2.6	28	95	0	126	52	0	2	44	1.15
67174--67228	23	2.4	23	87	0	74	50	7	21	20	1.71
73219--73248	2	15.0	2	100	0	60	50	0	0	50	1.00
73975--74050	37	2.1	37	97	0	143	22	18	14	44	1.86
76257--76328	35	2.1	35	86	5	101	45	6	0	47	1.29
77392--77538	35	4.2	35	87	1	179	34	1	21	42	1.61
78276--78301	9	2.9	9	100	0	52	34	0	0	65	0.93
78269--78323	25	2.2	25	81	9	69	29	1	1	67	1.11
82148--82198	27	2.0	25	84	7	66	49	5	3	41	1.45
86803--86843	2	21.0	2	90	5	66	48	0	2	48	1.14

Tables:   1

The End!